Jatropha Genome Database

JcCB0103991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103991.20 - phase: 1 /partial
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g40900.1                                                        69   1e-12
Glyma08g10040.1                                                        59   1e-09
Glyma05g27060.1                                                        59   1e-09
Glyma09g21600.1                                                        54   3e-08

>Glyma03g40900.1 
          Length = 864

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%)

Query: 15  EIFYSGQSFALPTGEIDLDSLANEVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQ 74
           E+ Y+G S     G  DL S  + VSD   RL+ LEAD  FL+HS+N    G+EG++ +Q
Sbjct: 783 ELGYNGHSSLALGGNNDLSSTGSLVSDFIGRLQVLEADLSFLKHSINLSSNGEEGLKLLQ 842

Query: 75  EIAFHLKELRRIGIRKEEQKTS 96
           EIA HL++LR+IGIR+ +Q  +
Sbjct: 843 EIAGHLQQLRQIGIRELDQPVA 864


>Glyma08g10040.1 
          Length = 920

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 41/56 (73%)

Query: 34  SLANEVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAFHLKELRRIGIR 89
           +L +EV +  ERL+ LEADR FL+H ++S+R G +G+  +QEI  HL+ELR + +R
Sbjct: 856 ALEDEVDNFYERLQVLEADREFLKHCISSLRKGDKGLHLLQEILQHLRELRSVELR 911


>Glyma05g27060.1 
          Length = 862

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%)

Query: 7   ELTGDENNEIFYSGQSFALPTGEIDLDSLANEVSDLNERLKALEADRIFLEHSMNSIRGG 66
           EL+GDE +       S      +    +L +EV ++ ERL+ LEADR FL+H ++S+R G
Sbjct: 771 ELSGDELDFPHLQNNSVEKVNSDKKKLALEDEVDNVYERLQVLEADREFLKHCISSLRKG 830

Query: 67  QEGVQFVQEIAFHLKELRRIGIR 89
            +G+  +QEI  HL++LR + +R
Sbjct: 831 DKGLHLLQEILQHLRDLRNVELR 853


>Glyma09g21600.1 
          Length = 741

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 38/52 (73%)

Query: 38  EVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAFHLKELRRIGIR 89
           EV  + ERL+ALEADR FL+H ++S+  G +G+  +QEI  HL++LR + +R
Sbjct: 681 EVDHVYERLQALEADREFLKHCISSLGKGDKGLDLIQEILQHLRDLRNVELR 732