Jatropha Genome Database

JcCB0102421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0102421.10 - phase: 0 /partial
         (162 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g08160.1                                                       202   1e-52
Glyma07g08160.2                                                       201   3e-52
Glyma03g01730.1                                                       100   8e-22

>Glyma07g08160.1 
          Length = 324

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/164 (63%), Positives = 116/164 (70%), Gaps = 6/164 (3%)

Query: 4   KNRVLVIGGTGYLGQHLLQGLSEIKER-----PFDIAFTYHXXXXXXXXXXXXXXHSRSF 58
           K ++LV+GGTGYLGQHLLQ              FD+AFT+H               S  F
Sbjct: 3   KVKILVVGGTGYLGQHLLQAYVHANANNGTPFAFDLAFTHHSSPPPQPLLDAIP-FSLPF 61

Query: 59  RVDIKTGEGFQTISYEFGQPDVVVNCAAISVPRACEMDPTAAMSINVPCSLVNWLSSFEL 118
           +VD+KTG GF+ IS  FGQPDVVVNCAAISVPRACE+DP  A +INVP SLV WL SFE 
Sbjct: 62  QVDLKTGFGFEAISNTFGQPDVVVNCAAISVPRACEIDPATAHAINVPSSLVKWLQSFEK 121

Query: 119 NKTLLIHLSTDQVYEGMKSFYKEEDENVPVNVYGKSKLAAEQFI 162
             TLLIHLSTDQVYEG KSFYKEED  VPVNVYGK+K+AAEQFI
Sbjct: 122 RSTLLIHLSTDQVYEGEKSFYKEEDIAVPVNVYGKTKVAAEQFI 165


>Glyma07g08160.2 
          Length = 287

 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/164 (63%), Positives = 116/164 (70%), Gaps = 6/164 (3%)

Query: 4   KNRVLVIGGTGYLGQHLLQGLSEIKER-----PFDIAFTYHXXXXXXXXXXXXXXHSRSF 58
           K ++LV+GGTGYLGQHLLQ              FD+AFT+H               S  F
Sbjct: 3   KVKILVVGGTGYLGQHLLQAYVHANANNGTPFAFDLAFTHHSSPPPQPLLDAIP-FSLPF 61

Query: 59  RVDIKTGEGFQTISYEFGQPDVVVNCAAISVPRACEMDPTAAMSINVPCSLVNWLSSFEL 118
           +VD+KTG GF+ IS  FGQPDVVVNCAAISVPRACE+DP  A +INVP SLV WL SFE 
Sbjct: 62  QVDLKTGFGFEAISNTFGQPDVVVNCAAISVPRACEIDPATAHAINVPSSLVKWLQSFEK 121

Query: 119 NKTLLIHLSTDQVYEGMKSFYKEEDENVPVNVYGKSKLAAEQFI 162
             TLLIHLSTDQVYEG KSFYKEED  VPVNVYGK+K+AAEQFI
Sbjct: 122 RSTLLIHLSTDQVYEGEKSFYKEEDIAVPVNVYGKTKVAAEQFI 165


>Glyma03g01730.1 
          Length = 316

 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/169 (45%), Positives = 100/169 (59%), Gaps = 19/169 (11%)

Query: 4   KNRVLVIGGTGYLGQHLLQGLSE--------IKERPF--DIAFTYHXXXXXXXXXXXXXX 53
           K ++LV+GGT YLGQHLLQ  +         I   PF  D+AFT+H              
Sbjct: 3   KVKILVVGGTCYLGQHLLQVYAHANANANANISGTPFVFDLAFTHHSSPPPHPLLDAIPS 62

Query: 54  HSRSFRVDIKTGEGFQTISYEFGQPDVVVNCAAISVPRACEMDPTAAMSINVPCSLVNWL 113
            S  F+VD+KTG GF+ IS  FGQ  ++   ++I +P    +   + + +++       L
Sbjct: 63  -SLPFQVDLKTGLGFEAISNTFGQGSLM--WSSIVLPSRFLVLVKSILPLHM------LL 113

Query: 114 SSFELNKTLLIHLSTDQVYEGMKSFYKEEDENVPVNVYGKSKLAAEQFI 162
           +   L  TLLIHLSTDQVYEG KSFYKEED  VPVNVYGK+K+AAEQFI
Sbjct: 114 TCHHLLTTLLIHLSTDQVYEGEKSFYKEEDIAVPVNVYGKTKVAAEQFI 162