Jatropha Genome Database

JcCB0101331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101331.10 + phase: 0 
         (103 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g23360.1                                                       100   4e-22

>Glyma16g23360.1 
          Length = 604

 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 10/94 (10%)

Query: 8   EDFDDLFMGPRANWKGTHGPGSARSEIKELWIDKYKPRSLEELAVHKKKVEGVKIWFEER 67
           +DF+++F G + +  GTH     R   ++LWIDKYKP SLEELAVHKKKVE VK WFEER
Sbjct: 72  DDFNEVFTGSKVS-AGTH-----RHYAEDLWIDKYKPCSLEELAVHKKKVEEVKTWFEER 125

Query: 68  LRASKEKIENNVLVITGQAGVGKSVSFCSAVHML 101
           L+ SK    NNVLVI+GQAGVGKS    +A+H++
Sbjct: 126 LKPSKGAYCNNVLVISGQAGVGKS----AAIHVI 155