Jatropha Genome Database

JcCB0100521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100521.10 - phase: 0 /partial
         (107 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g38290.1                                                       134   3e-32
Glyma02g06510.1                                                       100   6e-22
Glyma16g25550.1                                                        94   4e-20
Glyma02g06500.1                                                        90   5e-19

>Glyma01g38290.1 
          Length = 478

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 74/105 (70%)

Query: 3   AQQDNMQWGHRQIEPENTSVTAGLGLGLPCDGGSGLKELMMGTPSVFGPKQTTLDFXXXX 62
            QQDN+QWGH+ +EPE+ SV AGLGLGLPCD  SGLKELMMGTPS+FGPKQTTLDF    
Sbjct: 373 VQQDNLQWGHQPVEPESASVPAGLGLGLPCDSSSGLKELMMGTPSMFGPKQTTLDFLGLG 432

Query: 63  XXXXXXXXXXXXXXITSIGSGMDVAAAAASFGGGEYSGKDLGRSS 107
                         ITSIG G+DV  AAASF  GE+ GKD+GR S
Sbjct: 433 MAAGGTPGGGLSALITSIGGGLDVTTAAASFASGEFPGKDIGRRS 477


>Glyma02g06510.1 
          Length = 518

 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 67/99 (67%), Gaps = 6/99 (6%)

Query: 4   QQDNMQWGHRQ-IEPENTSVTA-GLGLGLPC-DGGSGLKELMMGTPSVFGPKQTTLDFXX 60
           QQ+ +QWGH+Q +EPE+ SV A GLGLGLPC DGGSGLKELMMGT S+FGPK TTLDF  
Sbjct: 422 QQNVLQWGHQQQLEPESGSVAAAGLGLGLPCEDGGSGLKELMMGTSSMFGPKHTTLDFLG 481

Query: 61  XXXXXXXXXXXXXXXXITSIGSGMDVAAAAASFGGGEYS 99
                           ITSIG G+DV AA   FG G++S
Sbjct: 482 LGMAAGGTAGGGLSALITSIGGGLDVTAA---FGNGDFS 517


>Glyma16g25550.1 
          Length = 476

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 58/85 (68%), Gaps = 4/85 (4%)

Query: 24  AGLGLGLPC-DGGSGLKELMMGTPSVFGPKQTTLDFXXXXXXXXXXXXXXXXXXITSIGS 82
           AGLGLGLPC DGGSGLKELMMGTPS+FGPK TTLDF                  ITSIG 
Sbjct: 395 AGLGLGLPCEDGGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGTAGGGLSALITSIGG 454

Query: 83  GMDVAAAAASFGGGEYSGKDLGRSS 107
           G+DV AA   FG G++SGKD+G SS
Sbjct: 455 GLDVTAA---FGNGDFSGKDIGGSS 476


>Glyma02g06500.1 
          Length = 494

 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 57/85 (67%), Gaps = 4/85 (4%)

Query: 24  AGLGLGLPC-DGGSGLKELMMGTPSVFGPKQTTLDFXXXXXXXXXXXXXXXXXXITSIGS 82
           +GLGLGLPC DGGSGLKELMMGT S+FGPK TTLDF                  ITSIG 
Sbjct: 413 SGLGLGLPCEDGGSGLKELMMGTSSMFGPKHTTLDFLGLGMAAGGTAGGGLSALITSIGG 472

Query: 83  GMDVAAAAASFGGGEYSGKDLGRSS 107
           G+DV AA   FG G++SGKD+G SS
Sbjct: 473 GLDVTAA---FGNGDFSGKDIGSSS 494