Jatropha Genome Database

JcCB0100471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100471.20 + phase: 0 /partial
         (98 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g11830.1                                                        62   2e-10
Glyma09g00980.1                                                        60   5e-10

>Glyma15g11830.1 
          Length = 312

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 8/83 (9%)

Query: 18 VGRC--KSPCLAYHSFQASQDFCGHVSWGCLFPAESSSFIKGEAASLPYRSFSTSILTPG 75
          +GRC   SP   + S    +D C  +S   + PA+ S  ++        R FSTSILTPG
Sbjct: 20 LGRCYFDSPSAGFASIYKPRDVCSSLSGERMLPADRS-LVRSMV-----RQFSTSILTPG 73

Query: 76 SSDGAFPSDLLSTKAVLTPERNI 98
          + D AFPSDLLS K + T ER I
Sbjct: 74 ADDSAFPSDLLSKKTLATSERTI 96


>Glyma09g00980.1 
          Length = 310

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/81 (44%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 18 VGRCKSPCLAYHSFQASQDFCGHVSWGCLFPAESSSFIKGEAASLPYRSFSTSILTPGSS 77
          +GRC      + S    +D CG +S   +F A+ S  + G       R FSTSILTPG  
Sbjct: 20 LGRCYFDSPGFASIYKPRDVCGGLSGERMFSADRS--LVGSMV----RQFSTSILTPGDD 73

Query: 78 DGAFPSDLLSTKAVLTPERNI 98
          D AFPSDLLS K + T ER I
Sbjct: 74 DSAFPSDLLSKKILATSERTI 94