Jatropha Genome Database

JcCB0097811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097811.20 + phase: 0 /TE/partial
         (83 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g35480.1                                                        54   4e-08
Glyma06g23600.1                                                        54   4e-08
Glyma08g41350.1                                                        53   6e-08

>Glyma07g35480.1 
          Length = 2270

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 8    YSKRVHPMTLKNGDSVLIILLDHEFQSHPRGKFRPNWHGPFKIQKLSDKGAAELVTLEGK 67
            + K+V P   + GD VL  +L   FQ   RGK+ PN+ GP+ +++    GA  L T++G 
Sbjct: 2197 FDKKVRPRVFQEGDLVLKKVLS--FQPDSRGKWTPNYEGPYVVKRTFSGGALTLTTMDGD 2254

Query: 68   PINRIVSQDQMKRFNV 83
             + R V+ D +K++ V
Sbjct: 2255 ELPRPVNADAVKKYFV 2270


>Glyma06g23600.1 
          Length = 2196

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 8    YSKRVHPMTLKNGDSVLIILLDHEFQSHPRGKFRPNWHGPFKIQKLSDKGAAELVTLEGK 67
            + K+V P   + GD VL  +L   FQ   RGK+ PN+ GP+ +++    GA  L T++G 
Sbjct: 2123 FDKKVRPRVFQEGDLVLKKVLS--FQPDSRGKWTPNYEGPYVVKRAFSGGALTLTTMDGD 2180

Query: 68   PINRIVSQDQMKRFNV 83
             + R V+ D +K++ V
Sbjct: 2181 ELPRPVNADAVKKYFV 2196


>Glyma08g41350.1 
          Length = 2794

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 8    YSKRVHPMTLKNGDSVLIILLDHEFQSHPRGKFRPNWHGPFKIQKLSDKGAAELVTLEGK 67
            + K+V P   + GD VL  +L   FQ   RGK+ PN+ GP+ +++    GA  L T++G 
Sbjct: 2721 FDKKVRPRVFQEGDLVLKKVLS--FQPDSRGKWTPNYEGPYVVKRTFSGGALTLTTMDGD 2778

Query: 68   PINRIVSQDQMKRFNV 83
             + R V+ D +K++ V
Sbjct: 2779 ELPRPVNVDAVKKYFV 2794