Jatropha Genome Database

JcCB0097441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097441.10 - phase: 2 /pseudo/partial
         (229 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g01500.1                                                       174   8e-44
Glyma17g07620.1                                                       130   1e-30

>Glyma13g01500.1 
          Length = 542

 Score =  174 bits (440), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 97/127 (76%)

Query: 76  GDYYGTHKWHWYFSQGFSAMLFTFLPFAIAGSIKSKCWKLSGLIAWVLIVYSILGHKEFR 135
           GDYYGTHKWHWYF+QGF  M+F+ LPF IAG I SK WK SGL+AWVL  YS+LGHKEFR
Sbjct: 285 GDYYGTHKWHWYFTQGFPVMIFSHLPFCIAGIIYSKQWKFSGLLAWVLGFYSLLGHKEFR 344

Query: 136 FVLPVLPVALIFSGYALSVMARPDSPNGDRKGSSKSHNKCLSKVGFAVIFLLCTNIPMAL 195
           F LPVLP+AL+FSGY+L+V+  P       K S K H +    +G A++FLL TNIPMAL
Sbjct: 345 FALPVLPIALMFSGYSLAVIEDPGYAQNKGKKSIKKHTRFPPNMGAAILFLLATNIPMAL 404

Query: 196 YMSLVHQ 202
           YMSLVHQ
Sbjct: 405 YMSLVHQ 411


>Glyma17g07620.1 
          Length = 451

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 83/127 (65%), Gaps = 12/127 (9%)

Query: 76  GDYYGTHKWHWYFSQGFSAMLFTFLPFAIAGSIKSKCWKLSGLIAWVLIVYSILGHKEFR 135
           GDYYGTHKWHWYF+QGF  M+     F              GL+AWVL  YS+LGHKEFR
Sbjct: 212 GDYYGTHKWHWYFTQGFPVMISLTYHF------------FHGLLAWVLGFYSLLGHKEFR 259

Query: 136 FVLPVLPVALIFSGYALSVMARPDSPNGDRKGSSKSHNKCLSKVGFAVIFLLCTNIPMAL 195
           FVLPVLP+ L+FS Y+L+++  P         SSK H +   K+G A++FLL TNI MAL
Sbjct: 260 FVLPVLPIVLMFSVYSLAMIEDPGYAQYKGNKSSKKHTRFPPKMGAAILFLLATNIRMAL 319

Query: 196 YMSLVHQ 202
           YMSLVH+
Sbjct: 320 YMSLVHR 326