Jatropha Genome Database

JcCB0096691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096691.10 - phase: 1 /pseudo/partial
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g35100.1                                                        48   2e-06
Glyma14g10090.1                                                        48   2e-06
Glyma17g35090.1                                                        47   4e-06
Glyma14g10100.1                                                        47   5e-06

>Glyma17g35100.1 
          Length = 483

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 24/31 (77%)

Query: 1   YIGSSSSRDSEPERFRRTDGKKWRCSRDTVC 31
           ++G S+S D EP R RRTDGKKWRCSRD V 
Sbjct: 151 HLGFSNSTDPEPGRCRRTDGKKWRCSRDAVV 181


>Glyma14g10090.1 
          Length = 565

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 24/31 (77%)

Query: 1   YIGSSSSRDSEPERFRRTDGKKWRCSRDTVC 31
           ++G S+S D EP R RRTDGKKWRCSRD V 
Sbjct: 187 HLGFSNSTDPEPGRCRRTDGKKWRCSRDAVV 217


>Glyma17g35090.1 
          Length = 658

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 24/31 (77%)

Query: 1   YIGSSSSRDSEPERFRRTDGKKWRCSRDTVC 31
           ++G S++ D EP R RRTDGKKWRCSRD V 
Sbjct: 256 HLGFSNNTDPEPGRCRRTDGKKWRCSRDAVV 286


>Glyma14g10100.1 
          Length = 544

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 24/31 (77%)

Query: 1   YIGSSSSRDSEPERFRRTDGKKWRCSRDTVC 31
           ++G S++ D EP R RRTDGKKWRCSRD V 
Sbjct: 189 HLGFSNNTDPEPGRCRRTDGKKWRCSRDAVV 219