Jatropha Genome Database

JcCB0096311.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096311.20 + phase: 0 
         (93 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g14220.1                                                        61   3e-10
Glyma06g14210.1                                                        60   5e-10
Glyma06g14200.1                                                        60   5e-10
Glyma04g40580.1                                                        59   1e-09
Glyma20g31600.1                                                        54   4e-08
Glyma20g31700.1                                                        54   4e-08
Glyma20g31610.1                                                        54   4e-08
Glyma10g35980.1                                                        53   6e-08
Glyma07g05480.1                                                        49   2e-06

>Glyma06g14220.1 
          Length = 365

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 41/49 (83%), Gaps = 1/49 (2%)

Query: 1  MVLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRML 49
          MVLKSA+EL+++ I+  A   G+ LSP +I++Q+PT+NPDAPV+LDR+L
Sbjct: 34 MVLKSALELDLLEIIAKA-GPGVHLSPTDISSQLPTQNPDAPVMLDRIL 81


>Glyma06g14210.1 
          Length = 366

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 1  MVLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRML 49
          MVLKSA+EL+++ I+  A   G+ LSP +IA+Q+PT NP+APV+LDR+L
Sbjct: 34 MVLKSALELDLLEIIAKA-GPGVHLSPTDIASQLPTHNPNAPVMLDRIL 81


>Glyma06g14200.1 
          Length = 365

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 41/49 (83%), Gaps = 1/49 (2%)

Query: 1  MVLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRML 49
          M+LKSA+EL+++ I+  A   G+ LSP +I++Q+PT+NPDAPV+LDR+L
Sbjct: 34 MILKSALELDLLEIIAKA-GPGVHLSPTDISSQLPTQNPDAPVMLDRIL 81


>Glyma04g40580.1 
          Length = 365

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 1  MVLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRML 49
          MVLKSA+EL+++ I+  A   G+ LSP +IA+++PT NPDAPV+LDR+L
Sbjct: 34 MVLKSALELDLLEIIAKA-GPGVHLSPSDIASRLPTHNPDAPVMLDRIL 81


>Glyma20g31600.1 
          Length = 360

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 2  VLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRMLNTCSS 54
          VL +A+ELN+  I+  AT  G ++S  EIA+++PT++PD P  LDRML   +S
Sbjct: 30 VLNAAIELNLFEIIAKATPAGSFMSSHEIASKLPTQHPDLPNRLDRMLRLLAS 82


>Glyma20g31700.1 
          Length = 360

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 2  VLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRMLNTCSS 54
          VL +A+ELN+  I+  AT  G ++S  EIA+++PT++PD P  LDRML   +S
Sbjct: 30 VLNAAIELNLFEIIAKATPAGSFMSSHEIASKLPTQHPDLPNRLDRMLRLLAS 82


>Glyma20g31610.1 
          Length = 360

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 2  VLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRMLNTCSS 54
          VL +A+ELN+  I+  AT  G ++S  EIA+++PT++PD P  LDRML   +S
Sbjct: 30 VLNAAIELNLFEIIAKATPAGSFMSSHEIASKLPTQHPDLPNRLDRMLRLLAS 82


>Glyma10g35980.1 
          Length = 369

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 2  VLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRMLNTCSS 54
          VL +A+ELN+  I+  AT  G ++S  EIA+++PT++PD P  LDRML   +S
Sbjct: 39 VLNAAIELNLFEIIAKATPAGTFISSHEIASKLPTQHPDLPNRLDRMLRLLAS 91


>Glyma07g05480.1 
          Length = 372

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 2  VLKSAVELNIINIVTTATNDGLWLSPVEIAAQIPTKNPDAPVLLDRMLNTCSS 54
          V+++A+EL I +I+  A  +G  LS  EI  Q+ TKNP+AP +LDR+L   +S
Sbjct: 40 VVRTAIELGIFDIIAKA-GEGAKLSAEEIIEQLGTKNPEAPTMLDRLLRLLAS 91