Jatropha Genome Database

JcCB0095101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095101.10 + phase: 0 
         (102 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g35300.1                                                        52   2e-07
Glyma12g35200.1                                                        50   7e-07

>Glyma13g35300.1 
          Length = 142

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 2/52 (3%)

Query: 16 LELAAIAISLNVRLRSSNMPLHKQERALRCARS--FLDSAPNHRPNSSDLAR 65
          + LA++AIS NVRL+SS+MPLH QE ALR  RS   L   P+ +P+++ +AR
Sbjct: 32 MRLASLAISFNVRLKSSHMPLHMQEHALRHTRSLFLLHHPPSPKPSNTLIAR 83


>Glyma12g35200.1 
          Length = 152

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 6/68 (8%)

Query: 1  METSKNRNDCYPTEE-LELAAIAISLNVRLRSSNMPLHKQERALRCARSF--LDSAPNHR 57
          M T+ N N   P++  + LA++AIS NVRL+SS+MP H QE ALR  RS   L   P+ +
Sbjct: 29 MHTTPNPN---PSQTIMRLASLAISSNVRLKSSDMPSHMQEHALRHTRSLFPLHHPPSPK 85

Query: 58 PNSSDLAR 65
          P+++ +AR
Sbjct: 86 PSNTLIAR 93