Jatropha Genome Database

JcCB0094891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0094891.10 - phase: 0 /pseudo
         (152 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g43250.1                                                        80   1e-15
Glyma20g23580.1                                                        78   3e-15

>Glyma10g43250.1 
          Length = 435

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 68/132 (51%), Gaps = 9/132 (6%)

Query: 1   MGSLSGIIQRPIXXXXXXXXXXXXTDLSEKLPSVKSVDTCSGSLQSHSPLSDPVQEPSFS 60
           M S SG IQRP+             DLS+KLPS      CS S  +HS      Q+   S
Sbjct: 1   MSSFSGAIQRPLVAAAAVAVASFSADLSDKLPSRD----CSTSDLAHSTPCSNTQKSDSS 56

Query: 61  WVSHISVSRLTKLSFVNRIHVPVPSTNFLVPNSIHK-----YVPSTLASPLLLHSYQSAE 115
           WVSHIS S+L  LSFV RI VPVP   F VP+  H      Y  S  +SP L + Y SA+
Sbjct: 57  WVSHISDSKLANLSFVTRIPVPVPHVQFRVPSLGHNCVSNLYHSSVASSPHLRNLYHSAD 116

Query: 116 LAKGPKPTALTN 127
           L +  +P A ++
Sbjct: 117 LPRVSRPAAYSH 128


>Glyma20g23580.1 
          Length = 438

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 70/132 (53%), Gaps = 9/132 (6%)

Query: 1   MGSLSGIIQRPIXXXXXXXXXXXXTDLSEKLPSVKSVDTCSGSLQSHSPLSDPVQEPSFS 60
           M S SG IQRP+             DLS+KLPS      CS S  +HS     +QE   S
Sbjct: 1   MSSFSGAIQRPLVAAAAVAVASFSADLSDKLPSRD----CSTSDLAHSTPCSNIQESDSS 56

Query: 61  WVSHISVSRLTKLSFVNRIHVPVPSTNFLVP----NSIHK-YVPSTLASPLLLHSYQSAE 115
           WVSHIS S+L  LSFV +I VPVP+  F VP    N +   Y  S  +SPLL + Y SA+
Sbjct: 57  WVSHISDSKLANLSFVTQIPVPVPNVQFRVPSLGQNCVSNLYHSSVASSPLLRNLYHSAD 116

Query: 116 LAKGPKPTALTN 127
           L +  +  A ++
Sbjct: 117 LPRVSRSAAYSH 128