Jatropha Genome Database

JcCB0089711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0089711.10 + phase: 0 
         (69 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g05800.2                                                       104   2e-23
Glyma14g05800.1                                                       104   2e-23
Glyma12g28990.3                                                       104   2e-23
Glyma12g28990.2                                                       104   2e-23
Glyma12g28990.1                                                       104   2e-23
Glyma02g42660.2                                                        83   8e-17
Glyma02g42660.1                                                        83   8e-17
Glyma02g42670.1                                                        65   1e-11

>Glyma14g05800.2 
          Length = 69

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69


>Glyma14g05800.1 
          Length = 69

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69


>Glyma12g28990.3 
          Length = 69

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69


>Glyma12g28990.2 
          Length = 69

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69


>Glyma12g28990.1 
          Length = 69

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 55/69 (79%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69


>Glyma02g42660.2 
          Length = 69

 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/42 (92%), Positives = 41/42 (97%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAI 42
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAI 42


>Glyma02g42660.1 
          Length = 69

 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/42 (92%), Positives = 41/42 (97%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAI 42
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKEF+KVA RTAI
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAI 42


>Glyma02g42670.1 
          Length = 60

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/36 (86%), Positives = 33/36 (91%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKV 36
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRK  T +
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGETLI 36