Jatropha Genome Database

JcCB0087221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0087221.10 - phase: 0 
         (118 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01830.2                                                        97   5e-21
Glyma01g43640.1                                                        95   1e-20
Glyma11g01830.1                                                        77   3e-15
Glyma18g15470.1                                                        58   3e-09

>Glyma11g01830.2 
          Length = 377

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/60 (76%), Positives = 51/60 (85%), Gaps = 4/60 (6%)

Query: 10 AATANVNKGKKRKQRYLPHNKPVKKKGAYPLHPGVQGFFITCDGGRERQASHEAINVIDS 69
          AA AN   GKKR+ RYLPHNK VKKKG+YPL PGVQGFFITCDGGRE QAS EA+N++DS
Sbjct: 5  AAAAN---GKKRR-RYLPHNKAVKKKGSYPLRPGVQGFFITCDGGREHQASREALNILDS 60


>Glyma01g43640.1 
          Length = 384

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/52 (80%), Positives = 47/52 (90%), Gaps = 1/52 (1%)

Query: 18 GKKRKQRYLPHNKPVKKKGAYPLHPGVQGFFITCDGGRERQASHEAINVIDS 69
          GKKR+ RYLPHNK VKKKG+YPL PGVQGFFITCDGGRE QAS EA+N++DS
Sbjct: 13 GKKRR-RYLPHNKAVKKKGSYPLRPGVQGFFITCDGGREHQASREALNILDS 63


>Glyma11g01830.1 
          Length = 412

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 51/96 (53%), Gaps = 39/96 (40%)

Query: 9  SAATANVNKGKKRKQRYLPHN-----------------------------------KPVK 33
           AA AN   GKKR+ RYLPHN                                   K VK
Sbjct: 4  DAAAAN---GKKRR-RYLPHNVSLLLSFVAFVCTSKFLLFILLPRTEVVVFMNFFQKAVK 59

Query: 34 KKGAYPLHPGVQGFFITCDGGRERQASHEAINVIDS 69
          KKG+YPL PGVQGFFITCDGGRE QAS EA+N++DS
Sbjct: 60 KKGSYPLRPGVQGFFITCDGGREHQASREALNILDS 95


>Glyma18g15470.1 
          Length = 31

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 32 VKKKGAYPLHPGVQGFFITCDGGRERQAS 60
          VKKK +YPL PG+QGFFITCDGGRE QAS
Sbjct: 2  VKKKDSYPLRPGMQGFFITCDGGREHQAS 30