Jatropha Genome Database

JcCB0086351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086351.10 - phase: 2 /pseudo/partial
         (72 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g46540.1                                                        77   3e-15
Glyma12g10230.1                                                        77   4e-15
Glyma06g46540.2                                                        77   5e-15

>Glyma06g46540.1 
          Length = 942

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/42 (83%), Positives = 38/42 (90%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LN LQYMSLSMSVI YDD+RQR L++AKDEDISPFTAVDK
Sbjct: 554 MALNQLQYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDK 595


>Glyma12g10230.1 
          Length = 926

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/42 (80%), Positives = 38/42 (90%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LN LQYMSLSMS+I YDD+RQR L++AKDEDISPFTAVDK
Sbjct: 537 MALNQLQYMSLSMSIINYDDIRQRFLTNAKDEDISPFTAVDK 578


>Glyma06g46540.2 
          Length = 780

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/42 (83%), Positives = 38/42 (90%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LN LQYMSLSMSVI YDD+RQR L++AKDEDISPFTAVDK
Sbjct: 567 MALNQLQYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDK 608