Jatropha Genome Database

JcCB0084971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084971.10 + phase: 0 /pseudo/partial
         (185 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g07300.1                                                       272   1e-73
Glyma16g03690.1                                                       268   2e-72
Glyma10g37680.1                                                        80   9e-16
Glyma20g30130.1                                                        80   2e-15

>Glyma07g07300.1 
          Length = 717

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/152 (88%), Positives = 137/152 (90%), Gaps = 1/152 (0%)

Query: 35  GYNRVEEIIWVKTNQLQRIIRTGRTGH*LNHSKEHCLVGILGNPEVNRNIDTDLIVAEVR 94
           GY RVEEIIWVKTNQLQRIIRTGRTGH LNHSKEHCLVGI GNPEVNRNIDTD+IVAEVR
Sbjct: 530 GYKRVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGNPEVNRNIDTDVIVAEVR 589

Query: 95  ETSR*PDEMYPVLERISPRTRTLELFARMHNTHAGWMSLGNQLGGVRLVDEGLRARFKAA 154
           ETSR PDEMYP+LERISPRTR LELFARMHNTHAGWMSLGNQL GVRLVDEGLRARFKAA
Sbjct: 590 ETSRKPDEMYPLLERISPRTRKLELFARMHNTHAGWMSLGNQLSGVRLVDEGLRARFKAA 649

Query: 155 YPDVVVQSPSPPWASAMEID-STASQMRSPFA 185
           YPDV VQ  SPP ASAME+D S A   RSPFA
Sbjct: 650 YPDVEVQPLSPPRASAMEVDTSIAPHTRSPFA 681


>Glyma16g03690.1 
          Length = 761

 Score =  268 bits (686), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/152 (86%), Positives = 137/152 (90%), Gaps = 1/152 (0%)

Query: 35  GYNRVEEIIWVKTNQLQRIIRTGRTGH*LNHSKEHCLVGILGNPEVNRNIDTDLIVAEVR 94
           GY RVEEIIWVKTNQLQRIIRTGRTGH LNHSKEHCLVGI G+PEVNRNIDTD+IVAEVR
Sbjct: 574 GYKRVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGDPEVNRNIDTDVIVAEVR 633

Query: 95  ETSR*PDEMYPVLERISPRTRTLELFARMHNTHAGWMSLGNQLGGVRLVDEGLRARFKAA 154
           ETSR PDEMYP+LERISP TR LELFARMHNTHAGWMSLGNQL GVRLVDEGLRARFKAA
Sbjct: 634 ETSRKPDEMYPMLERISPGTRKLELFARMHNTHAGWMSLGNQLSGVRLVDEGLRARFKAA 693

Query: 155 YPDVVVQSPSPPWASAMEID-STASQMRSPFA 185
           YPDV VQ  SPP ASAME+D S A+  RSPF+
Sbjct: 694 YPDVEVQPASPPRASAMEVDTSVAAHSRSPFS 725


>Glyma10g37680.1 
          Length = 734

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 10/127 (7%)

Query: 35  GYNRVEEIIWVKTNQLQRIIRTGRTGH*L-NHSKEHCLVGILGNPE-------VNRNIDT 86
           G+ R E+I WVKTN+           H L  HSKEHCL+GI G          ++ NIDT
Sbjct: 468 GFRRCEDICWVKTNKSNATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDT 527

Query: 87  DLIVAEVRE--TSR*PDEMYPVLERISPRTRTLELFARMHNTHAGWMSLGNQLGGVRLVD 144
           D+I+AE     +++ P++MY ++E  +   R LELF   HN  AGW+++G +L       
Sbjct: 528 DVIIAEEPPYGSTQKPEDMYRIIEHFALGRRRLELFGEDHNIRAGWLTVGKELSSSNFNK 587

Query: 145 EGLRARF 151
           E     F
Sbjct: 588 EAYVKSF 594


>Glyma20g30130.1 
          Length = 1049

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 10/127 (7%)

Query: 35  GYNRVEEIIWVKTNQLQRIIRTGRTGH*L-NHSKEHCLVGILGNPE-------VNRNIDT 86
           G+ R E+I WVKTN+           H L  HSKEHCL+GI G          ++ NIDT
Sbjct: 783 GFRRCEDICWVKTNKSNATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDT 842

Query: 87  DLIVAEVRE--TSR*PDEMYPVLERISPRTRTLELFARMHNTHAGWMSLGNQLGGVRLVD 144
           D+I+AE     +++ P++MY ++E  +   R LELF   HN  AGW+++G +L       
Sbjct: 843 DVIIAEEPPYGSTQKPEDMYRIIEHFALGRRRLELFGEDHNIRAGWLTVGKELSSSNFNK 902

Query: 145 EGLRARF 151
           E     F
Sbjct: 903 EAYVKSF 909