Jatropha Genome Database

JcCB0083591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083591.10 + phase: 0 
         (160 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g03440.1                                                       265   2e-71
Glyma17g13990.1                                                       261   2e-70
Glyma05g03440.2                                                       221   3e-58
Glyma04g42790.1                                                        48   3e-06

>Glyma05g03440.1 
          Length = 331

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/144 (86%), Positives = 129/144 (89%)

Query: 16  QVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVRQ 75
           +VPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF+FVNQ NVFKVCDQPHPLHVKNMVR 
Sbjct: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRN 246

Query: 76  VIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 135
           VIEG FD+ACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 247 VIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 306

Query: 136 GVGSYXXXXXXXXXXXXVRETAKA 159
           GVGSY            VRETAKA
Sbjct: 307 GVGSYLQLCGLLAKLSLVRETAKA 330


>Glyma17g13990.1 
          Length = 332

 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/144 (86%), Positives = 128/144 (88%)

Query: 16  QVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVRQ 75
           +VPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF+FVNQ NVFKVCDQPHPLHVKNMV  
Sbjct: 188 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVCN 247

Query: 76  VIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 135
           VIEG FD+ACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 248 VIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 307

Query: 136 GVGSYXXXXXXXXXXXXVRETAKA 159
           GVGSY            VRETAKA
Sbjct: 308 GVGSYLQLCGLLAKLSLVRETAKA 331


>Glyma05g03440.2 
          Length = 302

 Score =  221 bits (562), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/113 (90%), Positives = 107/113 (94%)

Query: 16  QVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVRQ 75
           +VPYVPEGLEAIIFTADGDMRQALNNLQAT+SGF+FVNQ NVFKVCDQPHPLHVKNMVR 
Sbjct: 187 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRN 246

Query: 76  VIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 128
           VIEG FD+ACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMK   +
Sbjct: 247 VIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKVVNY 299


>Glyma04g42790.1 
          Length = 363

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 22  EGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVRQVIEGKF 81
            GL A++  ++GDMR+ALN LQ+TH   + + +E V+     P P  ++ +   ++  +F
Sbjct: 222 SGLAALVRLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLPKDIEQISYWLLNEQF 281

Query: 82  DDACSGLKQLYDL-GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDG 136
            D+   + ++    G +  DI+  +   +    M   ++++ M +      R+  G
Sbjct: 282 ADSFKRIDEMKTRKGLALVDIVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFG 337