Jatropha Genome Database

JcCB0082981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082981.10 - phase: 0 /pseudo/partial
         (974 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g13370.1                                                       222   1e-57
Glyma16g13340.1                                                       124   4e-28

>Glyma16g13370.1 
          Length = 505

 Score =  222 bits (566), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/272 (43%), Positives = 167/272 (61%), Gaps = 9/272 (3%)

Query: 706 AHLISQTQKSDCPSEGQNTSNLFVRSTEKPKPHFKVGLVGDETTSDANNPGSEKQGTLFC 765
           + +I     +D P E  +T+ L V++     P  +  ++G  +     NP S +  TLF 
Sbjct: 11  SEIILVNNSNDKPCETDDTAGLCVQT-----PQIRSDVLGGHSNLVDPNPTSSQNLTLFA 65

Query: 766 -HNKTLISKEVQGSSELKKQRNLELNNELEDAVEFLGCYFHPMPVLLLLLSRKGNEIYIC 824
             NK   +KEVQ  SE    +N EL N L  +V+F+G Y HPMPV  L LS + +EI++C
Sbjct: 66  DENKCFGTKEVQLISEPMPLQNQELKNNLGSSVKFVGRYLHPMPVSSLFLSTREDEIHVC 125

Query: 825 AVCGLPVDKNRTLFLYKLAVEEPKIGCPYFVGHTSVAWPSSTDIFGREI---AFERSGLQ 881
            +CG    + RTLF YK+A+ EP +GCP  + H+S+  P     F +EI       SG+Q
Sbjct: 126 VLCGYLTGQYRTLFTYKVAIAEPTLGCPSVMAHSSILLPDPKHNFIKEINPHCQNLSGVQ 185

Query: 882 LTPDGKCLVLLGNTRTPYCREGRIDCLCSTCTTDCNENSTVKIVQVQDGYVSVLLKLRTT 941
           LTP G+ +VL+G+ +TP CREG+IDC CSTC + C+E + +KIVQV+ GYVSV+  L T 
Sbjct: 186 LTPGGQYVVLIGSIKTPNCREGKIDCHCSTCKSVCSEKNALKIVQVEHGYVSVVTTLETV 245

Query: 942 DSLQCILVCEPDHIIAAGESRGLNLWTMNSTW 973
           D++ CILVCEP+ +++ GES  L +W MNS W
Sbjct: 246 DNVHCILVCEPNRLVSVGESGKLQVWVMNSKW 277


>Glyma16g13340.1 
          Length = 203

 Score =  124 bits (312), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/89 (68%), Positives = 69/89 (77%)

Query: 1   KKEMYLQRGKDRYPYPVGYQARRAYNGGTYKMEIQEGHKGPLFVITSADGHLCSGQTADI 60
           KK     RGKDRYPYPVGYQA RAYNG TYKMEI EG  GP F+I+S DG   SG+T D 
Sbjct: 37  KKYWTTSRGKDRYPYPVGYQAVRAYNGTTYKMEICEGVNGPRFLISSDDGSSSSGKTPDQ 96

Query: 61  AWDKFQKKGCPRMKIWHGKRFLCKIDGIE 89
           AW++FQKKGCPR+KIWHGKR   K+DG+E
Sbjct: 97  AWEEFQKKGCPRIKIWHGKRLSSKMDGLE 125