Jatropha Genome Database

JcCB0082871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082871.10 - phase: 2 /partial
         (301 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g03160.1                                                       192   3e-49
Glyma08g27980.1                                                       104   1e-22
Glyma18g51050.1                                                        89   4e-18

>Glyma05g03160.1 
          Length = 325

 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/274 (41%), Positives = 142/274 (51%), Gaps = 23/274 (8%)

Query: 5   SCTTDGMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMI 64
           SCT DG+YL GGA SG AY+W+V NG LLKTW+AH+KSL CM+F              MI
Sbjct: 34  SCTNDGIYLVGGALSGKAYLWDVTNGKLLKTWKAHNKSLNCMLFSDDNSLLFSSSSDGMI 93

Query: 65  CVWSMLSLLDMGNXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXDATCKAWDLV 121
           CVW M+SLLD+ +                                     D TCK WD +
Sbjct: 94  CVWPMISLLDVEDTRSSPPPLHCFLGHMSSITGLLTTPNSYLSRLVSSSLDGTCKVWDFI 153

Query: 122 SGTLVQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVV-L 180
           SG LVQT  YP  IT+I LH  E  LF G+  G I V+ L++   +   +V E Q  + L
Sbjct: 154 SGMLVQTHVYPFAITSITLHQREMLLFCGTEKGTIIVNKLDVGQEEGFSIVNESQQPLEL 213

Query: 181 EGHKGSITALTFSTLGLISASEDCTISLWDAVSWVPIQKFN------------------P 222
           +GH G+ITALT +   LISASEDC+I  WD  SW  IQ+F+                  P
Sbjct: 214 KGHNGAITALTSTRACLISASEDCSICAWDIFSWKRIQRFSIQKGKVTNLVIVSRSSLLP 273

Query: 223 SSNHQRVSYKFRVSLLHKCPLPAANSSKGTVTLL 256
           + NH+RV  ++ VS L K P    NS KGT TLL
Sbjct: 274 TPNHRRVPNQYHVSQLEKYP-QLVNSFKGTTTLL 306


>Glyma08g27980.1 
          Length = 470

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 93/217 (42%), Gaps = 7/217 (3%)

Query: 10  GMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMICVWSM 69
           G Y+AGGAPSG+ Y+WEV  G LLK WRAH +++ C++F               + VWS+
Sbjct: 111 GTYIAGGAPSGDIYLWEVETGRLLKKWRAHFRAVSCLVFSEDDSLLVSGSEDGSVRVWSL 170

Query: 70  LSLLD----MGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATCKAWDLVSGTL 125
             + D                                         D TCK W L  G L
Sbjct: 171 FMIFDDLRCQQASNLYEYSFSEHTLTVTDVVIGNGGCNAIIVSASNDRTCKVWSLSRGML 230

Query: 126 VQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVVLEGHKG 185
           ++   +P  I  IAL P E   +AGS DG+IF++ LN E +          +     H  
Sbjct: 231 LRNIVFPSIINCIALDPAEHVFYAGSEDGKIFIAALNTESITTNN-YGMHIIGSFSNHSN 289

Query: 186 SITALTFSTLG--LISASEDCTISLWDAVSWVPIQKF 220
            +T L + T    LI+ SED  + +W+A +   ++ F
Sbjct: 290 QVTCLAYGTSENLLITGSEDGMVRVWNARTRNIVRMF 326


>Glyma18g51050.1 
          Length = 447

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 19/225 (8%)

Query: 10  GMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMICVWSM 69
           G ++A GAPSG+ Y+WEV  G LLK W AH +++ C++F                 V  +
Sbjct: 90  GTFIAAGAPSGDIYLWEVETGRLLKKWHAHFRAVSCLVFSEDDSLLVSGSEDGSDSV--L 147

Query: 70  LSLLD-MGNXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXDATCKAWDLVSGTL 125
           L + D + N                                     D TCK W L  G L
Sbjct: 148 LGIFDDLRNQQASSLYEYSFSEHTLTVTDVVIGNGGCNAIIVSASKDRTCKVWSLSRGML 207

Query: 126 VQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQ-----LVVL 180
           ++   +P  I  IAL P E   +AGS DG+IF++ LN E       +A +      +   
Sbjct: 208 LRNIVFPSIINCIALDPAEHVFYAGSEDGKIFIAALNTE------SIATNNYGMHIISSF 261

Query: 181 EGHKGSITALTFSTLG--LISASEDCTISLWDAVSWVPIQKFNPS 223
             H   +T L + +    LIS SED  + +W+A +   ++ F  S
Sbjct: 262 SNHSNQVTCLAYGSSENLLISGSEDGMVRVWNARTRNIVRMFKHS 306