Jatropha Genome Database

JcCB0081401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0081401.10 + phase: 0 /partial
         (218 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g44900.1                                                       171   4e-43
Glyma09g40920.1                                                        99   3e-21

>Glyma18g44900.1 
          Length = 398

 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/227 (47%), Positives = 136/227 (59%), Gaps = 36/227 (15%)

Query: 1   MTSFLLSRASWHTTRRALKYCLSSSLPIFNNI--AISSSNRTLETNPNFINIF-IPTLNQ 57
           M S L+SR+S    RR LK C SSS+ ++  I   + SS ++   NP+    F +P L  
Sbjct: 1   MASALISRSS----RRFLKPC-SSSVSLYPAIFNPVISSQQSASQNPSQNPPFKLPQLQS 55

Query: 58  FIQSYHCTSLGFKISHENQNPNPLNLKFFREISTLSS--SKNNENQENGGSSKEGHQSWI 115
           F   +  T+               +L  F  ++ +S+  SK N+N ++GG+      SW+
Sbjct: 56  FNFEFRKTTG--------------SLSSFHLVAHVSTWPSKENKNHQSGGNVSS---SWV 98

Query: 116 DLYLPRQARPYARLARLDKPIGTWLLTWPCMWSISLAASPGHLPDLKMMXXXXXXXXXXX 175
           +LYLPR+ +PYARLARLDKPIGTWLL WPCMWSI+LA +PGHLPD KM+           
Sbjct: 99  ELYLPRKVQPYARLARLDKPIGTWLLLWPCMWSITLATTPGHLPDFKMLALFGCGALLLR 158

Query: 176 XXXCTINDLLDRDIDTK---------VERTKLRPIASGLLTPFQGLC 213
              CTINDLLDRDIDT          VERTKLRP+ASGLLTPFQGLC
Sbjct: 159 GAGCTINDLLDRDIDTMATFSEMLQFVERTKLRPVASGLLTPFQGLC 205


>Glyma09g40920.1 
          Length = 441

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 91/183 (49%), Gaps = 44/183 (24%)

Query: 75  NQNP--NP---------LNLKFFREISTLSS-----------SKNNENQ--ENGGSSKEG 110
           NQNP  NP          N +F +   +LSS           SK N+NQ  +N  SS  G
Sbjct: 37  NQNPTLNPPFKPPQLQSFNFEFRKTTGSLSSFHLVAHLSTWHSKENKNQSGDNVSSSGGG 96

Query: 111 HQSWIDLYLPRQARPYARLARLDKPIGTWLLTWP----------CMWSIS-LAASPGH-L 158
             SW++LYLPR+ +PYARLARLDKPIGTWLL WP          C+  ++ L   PG   
Sbjct: 97  DTSWVELYLPRKVQPYARLARLDKPIGTWLLLWPSTTFSIRLNACIVPVNYLGCYPGSPS 156

Query: 159 PDLKMMXXXXXXXXXXXXXXCTIND-----LLDRDIDTK---VERTKLRPIASGLLTPFQ 210
           P LK                 +I D     L  + +      VERTKLR +ASGLLTPFQ
Sbjct: 157 PILKCWLCLDVGGFAFKSCIFSIGDTDIVILFCKSLQQGCVCVERTKLRQVASGLLTPFQ 216

Query: 211 GLC 213
           GLC
Sbjct: 217 GLC 219