Jatropha Genome Database

JcCB0080851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080851.10 + phase: 0 /partial
         (156 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g45230.1                                                        83   1e-16
Glyma01g04600.1                                                        65   3e-11
Glyma02g02950.1                                                        65   4e-11

>Glyma01g45230.1 
          Length = 186

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 49/53 (92%)

Query: 104 VRFIQNLFKKVSKQAREAVRSVLPVSISTKLVTFSVNGVLVLAFLWVLKAFLE 156
           VRF QN+FKKVSK+AR+AVRSVLP+ IS+ LV FSVNG+L+LAFLW+LKAFL+
Sbjct: 84  VRFFQNVFKKVSKRARKAVRSVLPLPISSHLVGFSVNGILLLAFLWILKAFLQ 136


>Glyma01g04600.1 
          Length = 195

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 45/53 (84%)

Query: 104 VRFIQNLFKKVSKQAREAVRSVLPVSISTKLVTFSVNGVLVLAFLWVLKAFLE 156
           +RF+Q++FKKVSK+A++A RSVLP  IS +LV+F+V+G L+LA L V+KA LE
Sbjct: 99  IRFLQSMFKKVSKRAKKASRSVLPTVISPQLVSFAVDGTLLLASLSVVKALLE 151


>Glyma02g02950.1 
          Length = 216

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 45/53 (84%)

Query: 104 VRFIQNLFKKVSKQAREAVRSVLPVSISTKLVTFSVNGVLVLAFLWVLKAFLE 156
           +RF+Q++FKKVSK+A++A RSVLP  IS +LV+F+V+G L+LA L V+KA LE
Sbjct: 120 IRFLQSMFKKVSKRAKKASRSVLPTVISPQLVSFAVDGTLLLASLSVVKALLE 172