Jatropha Genome Database

JcCB0080711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080711.10 + phase: 0 
         (111 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g42070.1                                                        61   2e-10
Glyma20g24960.1                                                        60   5e-10

>Glyma10g42070.1 
          Length = 96

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 35  CKAGAIRIFPDDNGIMSTSKERNITSNSYKASKDDLFHKFKFFNGRQPXXXXXXXRTEKG 94
           C+ GAIR+FP +          N+ +N    SK+DLF K+  F GR          T+KG
Sbjct: 27  CQVGAIRVFPGNAAANVEFSHGNMDNNK---SKEDLFKKY--FGGR--THLRPSNTTQKG 79

Query: 95  FEENKRRVPSCPDPLHN 111
           F+++KRRVPSCPDPLHN
Sbjct: 80  FDDSKRRVPSCPDPLHN 96


>Glyma20g24960.1 
          Length = 97

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 6/77 (7%)

Query: 35  CKAGAIRIFPDDNGIMSTSKERNITSNSYKASKDDLFHKFKFFNGRQPXXXXXXXRTEKG 94
           C+ GAIR+FP +          N+ +N  K+ ++DLF K+  F+GR          T+KG
Sbjct: 27  CQVGAIRVFPGNAVANVEFSHGNMDNN--KSKEEDLFKKY--FSGR--THLGPSNTTQKG 80

Query: 95  FEENKRRVPSCPDPLHN 111
           F+++KRRVPSCPDPLHN
Sbjct: 81  FDDSKRRVPSCPDPLHN 97