Jatropha Genome Database

JcCB0079761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0079761.10 + phase: 2 /pseudo/partial
         (165 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g01720.1                                                       181   3e-46

>Glyma12g01720.1 
          Length = 693

 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 103/129 (79%)

Query: 1   DYMQPIESIAFHEIVCFKHVEQLQVALIGDPRKRIQVDLLEFHNIIRCSCCSRSGNSLLP 60
           ++++P+E + FHEI CFK+VE+LQ+ LIGDPR+RIQVDLLEFH I+RCSCCS+SGN+LLP
Sbjct: 523 NFLKPVEGMPFHEIFCFKNVEKLQLVLIGDPRRRIQVDLLEFHKILRCSCCSKSGNALLP 582

Query: 61  SMNDSSIMYSLAREQDDLINLHDWYQSFKLVILSSSNKGKHRTKHFPSPKKRKVATEAAK 120
           S +DSSIMYSLA+E  DLINLHDW+QSF+ +++   NK K  +K  PS KKRK    +A 
Sbjct: 583 SRHDSSIMYSLAQEHGDLINLHDWFQSFRTIVIQHKNKRKQNSKQSPSSKKRKDINGSAD 642

Query: 121 PTEESIQYP 129
             E SIQYP
Sbjct: 643 QNEASIQYP 651