Jatropha Genome Database

JcCB0078661.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078661.20 - phase: 0 
         (175 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36430.1                                                        63   2e-10
Glyma13g27120.1                                                        62   5e-10
Glyma04g01180.1                                                        54   1e-07

>Glyma12g36430.1 
          Length = 135

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 3/53 (5%)

Query: 2  ADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGLATSKPATIANVLQIDVP 54
           +LRDE+GNP++LTD +GNPV LTDE GNPVH+T +AT+   ++   LQ D P
Sbjct: 4  VELRDEHGNPVELTDAYGNPVWLTDEKGNPVHLTAVATNAHKSM---LQNDTP 53


>Glyma13g27120.1 
          Length = 139

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 34/39 (87%)

Query: 2  ADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGLATS 40
           +LRDE+GNP++LTD +GNPV LTDE G PVH+TG+AT+
Sbjct: 4  VELRDEHGNPVELTDAYGNPVWLTDEKGKPVHLTGVATT 42


>Glyma04g01180.1 
          Length = 95

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 2  ADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHI 34
          A LRD++GNP+ LTD++GNPV LTDE GNPV +
Sbjct: 4  AQLRDQHGNPVPLTDQYGNPVILTDERGNPVQL 36