Jatropha Genome Database

JcCB0078191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078191.10 + phase: 1 /partial/short
         (34 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g05980.1                                                        58   3e-09
Glyma01g39290.1                                                        58   3e-09
Glyma17g20030.1                                                        54   3e-08
Glyma05g20250.1                                                        48   2e-06

>Glyma11g05980.1 
          Length = 398

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 30/32 (93%)

Query: 3   FSDSLRKAGWSSEEVSDALGFDFRPEKEKETG 34
           FSDSLRKAGWSSEEVS+ALGFDFRPEKE++  
Sbjct: 333 FSDSLRKAGWSSEEVSEALGFDFRPEKERKPA 364


>Glyma01g39290.1 
          Length = 406

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 30/32 (93%)

Query: 3   FSDSLRKAGWSSEEVSDALGFDFRPEKEKETG 34
           FSDSLRKAGWSSEEVS+ALGFDFRPEKE++  
Sbjct: 344 FSDSLRKAGWSSEEVSEALGFDFRPEKERKPA 375


>Glyma17g20030.1 
          Length = 203

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 27/30 (90%)

Query: 1   DRFSDSLRKAGWSSEEVSDALGFDFRPEKE 30
           +RFSDSLRK+GWSSEEV DALG D RPEK+
Sbjct: 148 ERFSDSLRKSGWSSEEVKDALGLDLRPEKK 177


>Glyma05g20250.1 
          Length = 207

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/30 (70%), Positives = 25/30 (83%)

Query: 1   DRFSDSLRKAGWSSEEVSDALGFDFRPEKE 30
           +RFSDSL+K+GWSSEEV D LG   RPEK+
Sbjct: 152 ERFSDSLKKSGWSSEEVKDVLGLYLRPEKK 181