Jatropha Genome Database

JcCB0078111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078111.10 - phase: 0 /partial
         (316 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g39120.1                                                       309   2e-84
Glyma12g31190.2                                                       308   6e-84
Glyma12g31190.1                                                       291   5e-79
Glyma19g38280.1                                                       264   9e-71
Glyma03g35640.1                                                       260   1e-69

>Glyma13g39120.1 
          Length = 368

 Score =  309 bits (792), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/274 (60%), Positives = 189/274 (68%), Gaps = 14/274 (5%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQ GKLMPNLDQ STK+LNLTVLQRIDPF+EEILITAAHVTFYEFNI+ +QWSRKDVEG
Sbjct: 1   MSQNGKLMPNLDQHSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQ+PYLLYRNAAQEVNGIWFYN+
Sbjct: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQIPYLLYRNAAQEVNGIWFYNA 120

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVIEGPLX-XXXXXXXXX 179
           RECEEVANLFSRILNAY              EFEELEAVP+M+V++GPL           
Sbjct: 121 RECEEVANLFSRILNAYAKVPPKSKVSSTKSEFEELEAVPTMAVMDGPLEPSSSTTSNVA 180

Query: 180 XXXXXXXXXXXXNATMVIGSSAANLANSRQPYH-----STATIPLSTHTPNVVSPPSHNP 234
                       +A M IG++ +N   + QPY      S++++P  T TP V       P
Sbjct: 181 DVPDDPSFVNFFSAAMAIGNT-SNTPITGQPYQSSAAISSSSVPTHTATPTV-------P 232

Query: 235 QIXXXXXXXXXXXVAIHDAPDPISSSNRVTNLVK 268
            +           +   DA + I SSNR   LVK
Sbjct: 233 TLQIPSLSQSTPLIPPLDAVESICSSNRTAKLVK 266


>Glyma12g31190.2 
          Length = 366

 Score =  308 bits (788), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 168/274 (61%), Positives = 189/274 (68%), Gaps = 14/274 (5%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQ GKLMPNLDQ STK+LNLTVLQRIDPF+EEILITAAHVTFYEFNI+ +QWSRKDVEG
Sbjct: 1   MSQNGKLMPNLDQHSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYN+
Sbjct: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNA 120

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVIEGPLX-XXXXXXXXX 179
           RECEEVANLFSRILNAY              EFEELEAVP+M+VI+GPL           
Sbjct: 121 RECEEVANLFSRILNAYAKVPPKSKVSSTKSEFEELEAVPTMAVIDGPLEPSSSTTSNVA 180

Query: 180 XXXXXXXXXXXXNATMVIGSSAANLANSRQPYH-----STATIPLSTHTPNVVSPPSHNP 234
                       +A M IG++ +N   + QP       S++++P +  TP V       P
Sbjct: 181 DVPDDPSFVNFFSAAMAIGNT-SNAPINGQPCQSSATISSSSVPTNAATPTV-------P 232

Query: 235 QIXXXXXXXXXXXVAIHDAPDPISSSNRVTNLVK 268
            +           +   DA + ISSSNR   LVK
Sbjct: 233 TLQIPTLSASTPLIPQLDAAELISSSNRTAKLVK 266


>Glyma12g31190.1 
          Length = 942

 Score =  291 bits (746), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 168/306 (54%), Positives = 189/306 (61%), Gaps = 46/306 (15%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQW------- 53
           MSQ GKLMPNLDQ STK+LNLTVLQRIDPF+EEILITAAHVTFYEFNI+ +QW       
Sbjct: 1   MSQNGKLMPNLDQHSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWVRFLSIY 60

Query: 54  -------------------------SRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVE 88
                                    SRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVE
Sbjct: 61  HFFFIHSISIPYQFSSSLSSAIASQSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVE 120

Query: 89  NLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNSRECEEVANLFSRILNAYXXXXXXXXXXX 148
           NLLGDFEYEVQVPYLLYRNAAQEVNGIWFYN+RECEEVANLFSRILNAY           
Sbjct: 121 NLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNARECEEVANLFSRILNAYAKVPPKSKVSS 180

Query: 149 XXXEFEELEAVPSMSVIEGPLX-XXXXXXXXXXXXXXXXXXXXXNATMVIGSSAANLANS 207
              EFEELEAVP+M+VI+GPL                       +A M IG++ +N   +
Sbjct: 181 TKSEFEELEAVPTMAVIDGPLEPSSSTTSNVADVPDDPSFVNFFSAAMAIGNT-SNAPIN 239

Query: 208 RQPYH-----STATIPLSTHTPNVVSPPSHNPQIXXXXXXXXXXXVAIHDAPDPISSSNR 262
            QP       S++++P +  TP V       P +           +   DA + ISSSNR
Sbjct: 240 GQPCQSSATISSSSVPTNAATPTV-------PTLQIPTLSASTPLIPQLDAAELISSSNR 292

Query: 263 VTNLVK 268
              LVK
Sbjct: 293 TAKLVK 298


>Glyma19g38280.1 
          Length = 359

 Score =  264 bits (675), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 140/219 (63%), Positives = 156/219 (71%), Gaps = 5/219 (2%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQT KL PNLDQQSTK+LNLTVLQRIDPFIEEIL TAAHV+FY+FNIESNQWSRKDVEG
Sbjct: 1   MSQTKKLTPNLDQQSTKVLNLTVLQRIDPFIEEILFTAAHVSFYDFNIESNQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKRN+QPRFQFIVMNRRNT+NLVENLL DFEYE++ PYLLYRNAAQEVNGIWFYN 
Sbjct: 61  SLFVVKRNSQPRFQFIVMNRRNTDNLVENLL-DFEYELKKPYLLYRNAAQEVNGIWFYNP 119

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVI-EGPLXXXXXXXXXX 179
            ECEEVANLF+RILNAY              E EEL+ V   S+I E PL          
Sbjct: 120 DECEEVANLFNRILNAYPKTAPTTVLPVNISESEELQPV---SIIPESPLESSSATASAI 176

Query: 180 XXXXXXXXXXXXNATMVIGSSAANLANSRQPYHSTATIP 218
                       +   V G+ A+N+ N RQ   +  + P
Sbjct: 177 DAVEDPANTNFLSTLKVTGNYASNMENFRQHSATVTSAP 215


>Glyma03g35640.1 
          Length = 359

 Score =  260 bits (665), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 153/269 (56%), Positives = 175/269 (65%), Gaps = 11/269 (4%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQT KL PNLDQQSTK+LNLTVLQRIDP+I+EIL TAAHV+FY+FNIESNQWSRKDVEG
Sbjct: 1   MSQTKKLTPNLDQQSTKVLNLTVLQRIDPYIDEILFTAAHVSFYDFNIESNQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKRN+QPRFQFIVMNRRNT+NLVENLL DFEYE++ PYLLYRNAAQEVNGIWFYN 
Sbjct: 61  SLFVVKRNSQPRFQFIVMNRRNTDNLVENLL-DFEYELKKPYLLYRNAAQEVNGIWFYNP 119

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVI-EGPLXXXXXXXXXX 179
            ECEEVANLF+RILNAY              E EEL+ V   S+I E PL          
Sbjct: 120 DECEEVANLFNRILNAYPKTPPTTIPPVNISESEELQPV---SIIPESPLESSSVAASAI 176

Query: 180 XXXXXXXXXXXXNATMVIGSSAANLANSRQPYHSTATIPLSTHTPNVVSPPSHNPQIXXX 239
                       +   V G+ A+N+ N RQ  HS AT+   T  P  +   +   QI   
Sbjct: 177 DAVEDPAFTNFFSTLKVTGNYASNMENFRQ--HS-ATV---TSAPGGLLSTAPTVQIPSA 230

Query: 240 XXXXXXXXVAIHDAPDPISSSNRVTNLVK 268
                       D+ +   S N+V NLVK
Sbjct: 231 SHSTSSISGFPLDSLETAKSGNQVINLVK 259