Jatropha Genome Database

JcCB0076151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0076151.10 + phase: 0 /pseudo
         (220 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g00780.1                                                       169   3e-42

>Glyma01g00780.1 
          Length = 218

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 106/174 (60%), Gaps = 1/174 (0%)

Query: 3   SKKRGLSLDEKREKILQIFYESQDFFXXXXXXXXXXXXXVIXXXXXXXXXXXXXXXXXXX 62
           SKKRGLSL+EKREK+LQIFYESQDF+             VI                   
Sbjct: 2   SKKRGLSLEEKREKMLQIFYESQDFYLLKELEKMGPRKGVISQSVKDVVQSLVDDDLVSK 61

Query: 63  XKIGTSVYFWSLPSCAGNQLRNVYRRLESDVQSSKKRYAELVDQCGGLKKGXXXXXXXXX 122
            KIGTSVYFWSLPSCAGNQLRNV R+L+SD++SSKKR+A+LVDQC  LKKG         
Sbjct: 62  DKIGTSVYFWSLPSCAGNQLRNVSRKLDSDLESSKKRHAQLVDQCEELKKGREESDERVE 121

Query: 123 XXXXXXXXXXKHNELKEEMGQYADNDPAAFEAMKSYTAKTAQITSSRCDNGVQT 176
                     KHNELK+E+ +Y DNDPAAFEAMK   A  A  +++R  + + T
Sbjct: 122 AIADLKAIEQKHNELKDELAKYKDNDPAAFEAMKEAIA-VAHASANRWTDNIFT 174