Jatropha Genome Database

JcCB0075891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075891.10 - phase: 0 /partial
         (143 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g07190.1                                                        74   5e-14
Glyma14g14400.2                                                        65   2e-11
Glyma14g14400.1                                                        65   2e-11
Glyma04g07100.1                                                        63   1e-10
Glyma17g31990.1                                                        55   2e-08

>Glyma06g07190.1 
          Length = 461

 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 11  LMDFDNLVVPIDGLETAHQNGVREQSPASGEEGVFSNSANGNIEKITVSTEPDGNLDDAS 70
           +MD  NL+ P DGLE  HQNGV ++    G++G+ SN   G + KI  +   +GNL++  
Sbjct: 1   MMDPSNLL-PADGLEEVHQNGVHDELSIFGKDGIASNVDPG-VTKIIETAATNGNLENFI 58

Query: 71  KLEDSGTGNSYAVEFREGSNVHVGSNGFTGSKEGELKDGSQSEQVKSLKGPGKGKNEKPS 130
           + + + T  S   E +EGSN ++  N  T SKE E +   ++EQ+K  KGP K KN KP 
Sbjct: 59  QYDSTATDYSSKEEIKEGSNDNIYMNNVTISKEEEAEIIDRTEQLKVGKGPAKNKNAKPP 118

Query: 131 NRKTVSATXEKK 142
           + +   A+  KK
Sbjct: 119 SPRGSHASSVKK 130


>Glyma14g14400.2 
          Length = 481

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 12  MDFDNLVVPIDGLETAHQNGVREQSPASGEEGVFSNSANGNIEKITVSTEPDGNLDDASK 71
           MD  N ++P DG+E  HQNGV ++   SGE+G  S   + ++ +   +  P+GN D+  +
Sbjct: 1   MDPIN-ILPADGVEVVHQNGVHDEPSNSGEDGGVSYDLDPSVPETAATVAPNGNFDNFHQ 59

Query: 72  LEDSGTGNSYAVEFREGSNVHVGSNGFTGSKEGELKDGSQSEQVKSLKGPGKGKNEK 128
            + + + NS   E +E SNV++     T  KE E+K   Q++Q ++ KG  K KN K
Sbjct: 60  SDSAASDNSLVAEIKE-SNVNIDGTNMTIPKEEEVKISDQTKQSRAPKGLVKNKNAK 115


>Glyma14g14400.1 
          Length = 481

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 12  MDFDNLVVPIDGLETAHQNGVREQSPASGEEGVFSNSANGNIEKITVSTEPDGNLDDASK 71
           MD  N ++P DG+E  HQNGV ++   SGE+G  S   + ++ +   +  P+GN D+  +
Sbjct: 1   MDPIN-ILPADGVEVVHQNGVHDEPSNSGEDGGVSYDLDPSVPETAATVAPNGNFDNFHQ 59

Query: 72  LEDSGTGNSYAVEFREGSNVHVGSNGFTGSKEGELKDGSQSEQVKSLKGPGKGKNEK 128
            + + + NS   E +E SNV++     T  KE E+K   Q++Q ++ KG  K KN K
Sbjct: 60  SDSAASDNSLVAEIKE-SNVNIDGTNMTIPKEEEVKISDQTKQSRAPKGLVKNKNAK 115


>Glyma04g07100.1 
          Length = 468

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)

Query: 11  LMDFDNLVVPIDGLETAHQNGVREQSPASGEEGVFSNSANGNIEKITVSTEPDGNLDDAS 70
           +MD  NL+ P DGLE  HQNGV ++   SG++ + SN   G + KI  +   +GN ++  
Sbjct: 1   MMDPSNLL-PADGLEEVHQNGVHDELSNSGKDDIASNVDPG-VTKIIETAATNGNFENFI 58

Query: 71  KLEDSGTGNSYAVEFREGSNVHVGSNGFTGSKEGELKDGSQSEQVKSLKGPGKGKNEKP 129
           + + + T  S     +EGSN ++  N  T SKE E K   ++ Q+K  KGP K KN KP
Sbjct: 59  QYDSTATDYSS----KEGSNDNIDVNNVTISKEEEAKIIDRTGQLKVGKGPAKNKNAKP 113


>Glyma17g31990.1 
          Length = 481

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 12  MDFDNLVVPIDGLETAHQNGVREQSPASGEEGVFSNSANGNIEKITVSTEPDGNLDDASK 71
           MD  NL+ P DG+E  HQNGV ++   SG++   S   + ++ +   +   +GN D+  +
Sbjct: 1   MDPINLL-PADGVEVVHQNGVHDEPSNSGDDDGVSYDLDPSVTETAATVALNGNFDNFHQ 59

Query: 72  LEDSGTGNSYAVEFREGSNVHVGSNGFTGSKEGELKDGSQSEQVKSLKGPGKGKNEK 128
            + + + NS+  E +E SN ++     T  KE E+K   Q++Q ++ KG  K KN K
Sbjct: 60  SDSAASDNSFVAEIKE-SNDNIDGTNMTIPKEEEVKISDQTKQSRAPKGLVKNKNAK 115