Jatropha Genome Database

JcCB0072841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0072841.10 + phase: 0 
         (119 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g31250.1                                                        89   9e-19
Glyma19g04820.1                                                        88   2e-18
Glyma08g28000.1                                                        77   3e-15
Glyma18g51070.1                                                        77   4e-15
Glyma05g07480.1                                                        65   1e-11
Glyma17g08970.1                                                        53   7e-08

>Glyma04g31250.1 
          Length = 498

 Score = 89.4 bits (220), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 4/67 (5%)

Query: 36 MKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQSD----VHLSSIPPKVVL 91
          MKLW++RA T+ LLWTCVVQL  LG+MWGPR+LKGWPSCF+  +    + L S     VL
Sbjct: 29 MKLWMIRATTSVLLWTCVVQLTTLGDMWGPRVLKGWPSCFTHDESAALIELPSATTPRVL 88

Query: 92 PPKSKFK 98
          PPK  +K
Sbjct: 89 PPKRVYK 95


>Glyma19g04820.1 
          Length = 508

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 10/84 (11%)

Query: 30  MVSRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQSDVHL----SSI 85
           ++ R  +K+W+ RAITT +LWTCVVQLMA+GE+ GPRLLKG P CFS  D       + +
Sbjct: 33  LIVRPGIKVWMARAITTVILWTCVVQLMAIGELRGPRLLKGMPYCFSHQDASQPMSNAYV 92

Query: 86  PPKVVLPPKSKFKILFIHFVTGYF 109
           P +VVLPPK       IH   GY 
Sbjct: 93  PARVVLPPKR------IHKNNGYL 110


>Glyma08g28000.1 
          Length = 473

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 47/70 (67%)

Query: 29 SMVSRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQSDVHLSSIPPK 88
          +++ R  +K+W+ RAIT  LLWT +VQL+ALGE+ GP LL+G P CFS   V     P K
Sbjct: 9  TLIIRPRIKMWMARAITIVLLWTSLVQLIALGELLGPSLLRGMPYCFSSPSVDKFLAPAK 68

Query: 89 VVLPPKSKFK 98
           VLPPK  ++
Sbjct: 69 AVLPPKRIYR 78


>Glyma18g51070.1 
          Length = 505

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 47/70 (67%)

Query: 29  SMVSRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQSDVHLSSIPPK 88
           S + R  +K+W+ RAIT  +LWT +VQL+ALGE+ GP LLKG P CFS   V  S    K
Sbjct: 33  SFIIRPRIKVWMARAITFVVLWTSLVQLIALGELLGPSLLKGMPYCFSSPPVEKSLAQAK 92

Query: 89  VVLPPKSKFK 98
           VVLPPK  ++
Sbjct: 93  VVLPPKRIYR 102


>Glyma05g07480.1 
          Length = 485

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/35 (71%), Positives = 32/35 (91%)

Query: 36 MKLWILRAITTALLWTCVVQLMALGEMWGPRLLKG 70
          MK+W++RA T+ LLWTC+VQL ALG+MWGPR+LKG
Sbjct: 42 MKMWMIRATTSVLLWTCIVQLTALGDMWGPRVLKG 76


>Glyma17g08970.1 
          Length = 505

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 15/64 (23%)

Query: 33 RSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQSDVHLSSIPPKVVLP 92
          RS MK+W++RA T+ LLWTC+VQL ALG++                DV L S  P  +LP
Sbjct: 42 RSRMKMWMIRATTSVLLWTCIVQLTALGDI--------------AMDVELPSQRPP-LLP 86

Query: 93 PKSK 96
          PKS+
Sbjct: 87 PKSQ 90