Jatropha Genome Database

JcCB0072041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0072041.10 - phase: 2 /pseudo/partial
         (133 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g09300.1                                                        68   3e-12
Glyma17g09820.1                                                        48   3e-06

>Glyma13g09300.1 
          Length = 177

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 49/75 (65%)

Query: 56  LASIWRPVKGVTIXKLHSNLYLFQFFHELDVERVLKGKPWTINHRSXXXXXXQKDDSPRK 115
           +A+IW+P+KGVTI  + +  +LF+F+H++D++RVLKG  W  +          +D++P +
Sbjct: 1   MANIWKPLKGVTISYIGNGTFLFRFYHQVDIQRVLKGGSWRFDRYMLILGVITEDENPLE 60

Query: 116 VSLTTMEIWVQVFDL 130
           + L  +  WVQ+ +L
Sbjct: 61  IPLFNVPFWVQIHNL 75


>Glyma17g09820.1 
          Length = 178

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 36 CLVGRLLTDRSVNFAAMKNTLASIWRPVKGVTIXKLHSNLYLFQFFHE 83
          C+VGR LT + +    MK  +  I  P+KGV+I ++   L+L+QFFH+
Sbjct: 8  CVVGRFLTYKPIRVKIMKERMTEILHPLKGVSIKEVEQGLFLYQFFHK 55