Jatropha Genome Database

JcCB0071481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071481.10 + phase: 1 /partial
         (144 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g30410.1                                                       119   9e-28
Glyma20g36750.2                                                       114   4e-26
Glyma20g36750.1                                                       113   6e-26
Glyma19g43420.1                                                       109   9e-25
Glyma03g40730.1                                                       102   1e-22

>Glyma10g30410.1 
          Length = 417

 Score =  119 bits (298), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 91/132 (68%), Gaps = 7/132 (5%)

Query: 20  IPVDSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQASNTSQSGSHVP-KG 78
           + +DS+EYQAFLKS+L+LACAAVA++R    KSQD    +D GSQ +N S  GS    KG
Sbjct: 92  VALDSEEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSDGGSQPTNPSLVGSQTTSKG 151

Query: 79  ---AGNDLSRPQDTDANGLVGIHS--STQKKSGVPMKSTTSGSSREQSEDDENEGETEMN 133
              +GND S+ QD D N  VGI S  + QKK  V ++ +TSGSSREQS+D++ EGET MN
Sbjct: 152 SIPSGNDQSKLQDKDINAPVGIPSIPAIQKKPAVAIRPSTSGSSREQSDDEDIEGETSMN 211

Query: 134 -MKDPADAKRVR 144
              DPAD KRVR
Sbjct: 212 DNTDPADVKRVR 223


>Glyma20g36750.2 
          Length = 303

 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 89/132 (67%), Gaps = 7/132 (5%)

Query: 20  IPVDSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQASN----TSQSGSHV 75
           +P+DS EYQAFLKS+L+LACAAVA++R    KSQD    ++ GSQ +N     SQ+ S  
Sbjct: 91  VPLDSDEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKG 150

Query: 76  PKGAGNDLSRPQDTDANGLVGIHS--STQKKSGVPMKSTTSGSSREQSEDDENEGETEMN 133
              + ND S+ QD D N  VGI S  + QKK  V ++ +TSGSSREQS+D++ EGET MN
Sbjct: 151 SIPSENDPSKLQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMN 210

Query: 134 -MKDPADAKRVR 144
              DPAD KRVR
Sbjct: 211 DNTDPADVKRVR 222


>Glyma20g36750.1 
          Length = 403

 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 89/132 (67%), Gaps = 7/132 (5%)

Query: 20  IPVDSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQASN----TSQSGSHV 75
           +P+DS EYQAFLKS+L+LACAAVA++R    KSQD    ++ GSQ +N     SQ+ S  
Sbjct: 91  VPLDSDEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKG 150

Query: 76  PKGAGNDLSRPQDTDANGLVGIHS--STQKKSGVPMKSTTSGSSREQSEDDENEGETEMN 133
              + ND S+ QD D N  VGI S  + QKK  V ++ +TSGSSREQS+D++ EGET MN
Sbjct: 151 SIPSENDPSKLQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMN 210

Query: 134 -MKDPADAKRVR 144
              DPAD KRVR
Sbjct: 211 DNTDPADVKRVR 222


>Glyma19g43420.1 
          Length = 341

 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 88/134 (65%), Gaps = 9/134 (6%)

Query: 19  NIPVDSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQASNTSQSGSHVP-K 77
           NI VDS++Y A LK++L+LACAAVA++R   +KSQ+    +DSG QASN+S+ G     K
Sbjct: 49  NINVDSQDYHAILKTKLNLACAAVAMTRGSLVKSQNPATFSDSGPQASNSSEDGLQATLK 108

Query: 78  G---AGNDLSRPQDTDANGLVGI--HSSTQKKSGVPMKSTTSGSSREQSEDDENEGETEM 132
           G   +GND S+ Q+ D    +GI   SS Q K  V M+ T SGSS EQS+D+E EGE  M
Sbjct: 109 GSGPSGNDPSKLQNKDVKAQIGIPSSSSMQNKPAVAMRPTISGSSGEQSDDEEVEGEINM 168

Query: 133 --NMKDPADAKRVR 144
             NM  P DAKRVR
Sbjct: 169 TENMT-PVDAKRVR 181


>Glyma03g40730.1 
          Length = 414

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 90/140 (64%), Gaps = 19/140 (13%)

Query: 19  NIPV----DSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQASNTSQSGSH 74
           NIPV    DS++Y A LK++L+LACAAVA++R   +KSQ+     DSG QASN S+ GSH
Sbjct: 95  NIPVTLHVDSQDYHAILKTKLNLACAAVAMTRGSLVKSQN----PDSGPQASNFSEVGSH 150

Query: 75  VP-KGAG----NDLSRPQDTDANGLVGIHS--STQKKSG-VPMKSTTSGSSREQSEDDEN 126
              KG+G    +D S+ Q+ D    +GI S  S Q KS  V M+ T SGSS EQS+D+E 
Sbjct: 151 ATLKGSGPFGNDDPSKLQNKDIKAQIGIPSSPSMQNKSAVVAMRPTISGSSGEQSDDEEA 210

Query: 127 EGETEM--NMKDPADAKRVR 144
           EGE  M  NM  P DAKRVR
Sbjct: 211 EGEINMTGNMT-PVDAKRVR 229