Jatropha Genome Database

JcCB0071361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071361.20 - phase: 2 /partial
         (169 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g07410.1                                                       134   6e-32
Glyma16g02070.1                                                       132   2e-31
Glyma16g02070.2                                                       124   4e-29

>Glyma16g07410.1 
          Length = 284

 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/202 (43%), Positives = 109/202 (53%), Gaps = 37/202 (18%)

Query: 1   SKLICKLTGDTVNKSEEHIWKHINGKRF-----LNKLEQKETEKVEGKQQEEEAKS---- 51
           SKLICKLTGD VNKSEEHIWKH++GKRF       + E+     +EG++   E+KS    
Sbjct: 81  SKLICKLTGDNVNKSEEHIWKHMSGKRFLNKLEQEEEEKLLCHGLEGEESLHESKSADGG 140

Query: 52  -------------------------SMDXXXXXXXXXXXXXXXXXPVDEIISEVRNFSDK 86
                                    S                    ++E+ISEVR  S++
Sbjct: 141 KKDRMKKKKKKKNRVKEIDEEKLQVSKSADGAKKDRMKKENNKDKGIEEVISEVRKSSNE 200

Query: 87  DSDSEEVDFWIPPAGEPWDFDDGGDRWXXXXXXXXXXXXX--XXAVEDNGKESEELSKCT 144
           +SD+E+ DFW+PPAG+ WD DDGGDRW                 A ED  KES+ELS  T
Sbjct: 201 NSDTEDEDFWMPPAGDRWDNDDGGDRWGSESEQGTEEGDVIDGDAAED-CKESDELSSRT 259

Query: 145 KRMSIEIGPSSFASRKKKTKKN 166
           KRMSIEIGPSSFA+RKKK+KKN
Sbjct: 260 KRMSIEIGPSSFATRKKKSKKN 281


>Glyma16g02070.1 
          Length = 284

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 112/205 (54%), Gaps = 41/205 (20%)

Query: 1   SKLICKLTGDTVNKSEEHIWKHINGKRF-------------LNKLEQ----KETEKVEGK 43
           SKLICKLTGD VNKSEEHIWKH++GKRF              + LE      E++  +G 
Sbjct: 79  SKLICKLTGDNVNKSEEHIWKHMSGKRFLNKLEQEEEEKLLCHGLEGGESLHESKSADGG 138

Query: 44  QQ------------------EEEAKSSMDXXXXXXXXXXXXXXXXXPVDEIISEVRNFSD 85
           ++                  EE+++ S                    ++E+ISEVR  S+
Sbjct: 139 KKDRMMKKKKNKKNKVKEIDEEKSQVSKSADGAKKDRMKKENNKDKGIEEVISEVRKSSN 198

Query: 86  KDSDSEEVDFWIPPAGEPWDFDDGGDRWXXXXXXXXXXXXX----XXAVEDNGKESEELS 141
           ++SD+EE DFW+PPAG+ WD DDGGDRW                   A ED  KESEELS
Sbjct: 199 ENSDTEE-DFWMPPAGDRWDNDDGGDRWGSESESEQGTEEGDVIDGDAAEDC-KESEELS 256

Query: 142 KCTKRMSIEIGPSSFASRKKKTKKN 166
             TKRMSIEIGPSSFA+RKKK+KKN
Sbjct: 257 SRTKRMSIEIGPSSFATRKKKSKKN 281


>Glyma16g02070.2 
          Length = 281

 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 110/205 (53%), Gaps = 44/205 (21%)

Query: 1   SKLICKLTGDTVNKSEEHIWKHINGKRF-------------LNKLEQ----KETEKVEGK 43
           SKLICKLTGD VNKSEEHIWKH++GKRF              + LE      E++  +G 
Sbjct: 79  SKLICKLTGDNVNKSEEHIWKHMSGKRFLNKLEQEEEEKLLCHGLEGGESLHESKSADGG 138

Query: 44  QQ------------------EEEAKSSMDXXXXXXXXXXXXXXXXXPVDEIISEVRNFSD 85
           ++                  EE+++ S                    ++E+ISEVR  S+
Sbjct: 139 KKDRMMKKKKNKKNKVKEIDEEKSQVSKSADGAKKDRMKKENNKDKGIEEVISEVRKSSN 198

Query: 86  KDSDSEEVDFWIPPAGEPWDFDDGGDRWXXXXXXXXXXXXX----XXAVEDNGKESEELS 141
           ++SD+EE DFW+PPAG+ WD DDGGDRW                   A ED  KESEELS
Sbjct: 199 ENSDTEE-DFWMPPAGDRWDNDDGGDRWGSESESEQGTEEGDVIDGDAAEDC-KESEELS 256

Query: 142 KCTKRMSIEIGPSSFASRKKKTKKN 166
               RMSIEIGPSSFA+RKKK+KKN
Sbjct: 257 ---SRMSIEIGPSSFATRKKKSKKN 278