Jatropha Genome Database

JcCB0070971.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070971.20 - phase: 2 /partial
         (83 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g18280.1                                                        48   2e-06

>Glyma13g18280.1 
          Length = 320

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 4   TLLVAFLAYFFFGEELRMXXXXXXXXXXXXXXXXXXXKEGDGDQIKSKDESFPAYDEEKD 63
           T+LVA LAYF FGE+L                     KE DGD  KS+ +SFP + E+K+
Sbjct: 251 TILVAILAYFVFGEQLHTGSLLGVVIVIIGLYLLLWGKESDGD-YKSQ-QSFPTHVEQKE 308

Query: 64  LQTQMETSARRE 75
            +TQ++TSA  E
Sbjct: 309 YRTQIKTSAEEE 320