Jatropha Genome Database

JcCB0068571.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0068571.20 - phase: 0 
         (79 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g27530.1                                                       114   2e-26
Glyma16g05350.1                                                       114   3e-26
Glyma19g27530.2                                                        75   2e-14
Glyma16g05350.2                                                        73   6e-14

>Glyma19g27530.1 
          Length = 137

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 65/77 (84%), Gaps = 1/77 (1%)

Query: 3   SVFPAEACETIGGEACLADIYPEVKLEREARNEAGIASEPIEREYLDYNDAKTVFVGEAC 62
           SVFPAEACET+GGEAC+A++YPEVKL+ EA+    + +E +EREYL+Y+D KTVF GEAC
Sbjct: 62  SVFPAEACETVGGEACMAEMYPEVKLQPEAKT-PRVVTENVEREYLEYDDPKTVFRGEAC 120

Query: 63  DDLGGEFCGFEYQKGVY 79
           DDLGG FC  EYQKGVY
Sbjct: 121 DDLGGTFCETEYQKGVY 137


>Glyma16g05350.1 
          Length = 137

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 64/77 (83%), Gaps = 1/77 (1%)

Query: 3   SVFPAEACETIGGEACLADIYPEVKLEREARNEAGIASEPIEREYLDYNDAKTVFVGEAC 62
           SVFPAEACET+GGEAC+A++YPE KL+ EA+    + +E +EREYL+Y+D KTVF GEAC
Sbjct: 62  SVFPAEACETVGGEACMAEMYPETKLQPEAKT-PRVVTENVEREYLEYDDPKTVFRGEAC 120

Query: 63  DDLGGEFCGFEYQKGVY 79
           DDLGG FC  EYQKGVY
Sbjct: 121 DDLGGTFCETEYQKGVY 137


>Glyma19g27530.2 
          Length = 113

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 45/53 (84%), Gaps = 1/53 (1%)

Query: 3   SVFPAEACETIGGEACLADIYPEVKLEREARNEAGIASEPIEREYLDYNDAKT 55
           SVFPAEACET+GGEAC+A++YPEVKL+ EA+    + +E +EREYL+Y+D KT
Sbjct: 62  SVFPAEACETVGGEACMAEMYPEVKLQPEAKT-PRVVTENVEREYLEYDDPKT 113


>Glyma16g05350.2 
          Length = 113

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 44/53 (83%), Gaps = 1/53 (1%)

Query: 3   SVFPAEACETIGGEACLADIYPEVKLEREARNEAGIASEPIEREYLDYNDAKT 55
           SVFPAEACET+GGEAC+A++YPE KL+ EA+    + +E +EREYL+Y+D KT
Sbjct: 62  SVFPAEACETVGGEACMAEMYPETKLQPEAKT-PRVVTENVEREYLEYDDPKT 113