Jatropha Genome Database

JcCB0065721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065721.10 - phase: 0 
         (105 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g39030.2                                                        80   7e-16
Glyma01g39030.1                                                        79   7e-16
Glyma11g06240.1                                                        79   8e-16

>Glyma01g39030.2 
          Length = 243

 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 50/57 (87%)

Query: 1  MVSDSDLVTRLREVLQDSDLDTATAGSIRRKLEEEFGVNLSDRKAFIREQIDIYLET 57
          MVS+S+L+ RLRE L+ SDL+T T  ++RR+LE +FG++LSDRKAFIREQ+D++L+T
Sbjct: 1  MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSDRKAFIREQVDLFLQT 57


>Glyma01g39030.1 
          Length = 337

 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 50/57 (87%)

Query: 1  MVSDSDLVTRLREVLQDSDLDTATAGSIRRKLEEEFGVNLSDRKAFIREQIDIYLET 57
          MVS+S+L+ RLRE L+ SDL+T T  ++RR+LE +FG++LSDRKAFIREQ+D++L+T
Sbjct: 1  MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSDRKAFIREQVDLFLQT 57


>Glyma11g06240.1 
          Length = 346

 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 50/57 (87%)

Query: 1  MVSDSDLVTRLREVLQDSDLDTATAGSIRRKLEEEFGVNLSDRKAFIREQIDIYLET 57
          MVS+S+L+ RLRE L+ SDL+T T  ++RR+LE +FG++LSDRKAFIREQ+D++L+T
Sbjct: 1  MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSDRKAFIREQVDLFLQT 57