Jatropha Genome Database

JcCB0064981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064981.20 + phase: 0 /partial/short
         (43 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g36150.1                                                        46   7e-06

>Glyma14g36150.1 
          Length = 307

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 1   GTLRDLSKKTQEHSLTPVEQGEAEANDSD--SGNAIHTHNNLVTY 43
           G LRDLSK+ QEHSL PVEQ + E NDSD  +  A   HNNL  +
Sbjct: 242 GALRDLSKRNQEHSLPPVEQVD-EGNDSDCRTATADPAHNNLPAF 285