Jatropha Genome Database

JcCB0064411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064411.20 - phase: 1 /pseudo/partial
         (199 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g34520.1                                                       132   2e-31
Glyma14g11050.1                                                       127   6e-30
Glyma04g05520.1                                                       124   5e-29
Glyma06g05530.1                                                       114   9e-26

>Glyma17g34520.1 
          Length = 384

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 99/162 (61%), Gaps = 18/162 (11%)

Query: 28  KSCADSLASKNSKSSEQSFVKVRKNNVSTRISAKPP-IGQVTRXXXXXXXXXXXXXXXXX 86
           K C DS    NSK+SE   +K+RKNNVSTRISA+PP IGQ TR                 
Sbjct: 238 KKCVDS---SNSKTSELCNIKIRKNNVSTRISARPPHIGQATRLSSSPSSEFHYDESCSN 294

Query: 87  XXXXXXXXXXXGNTGLASDRTEESGNSKPNYMNLTESTKAKRKTTNHLSHRIQR-QSMDE 145
                        T +  DRTE+S NS+P+YMNLTESTKAK+KT+NH  +R QR QSMDE
Sbjct: 295 SSSICT-----STTPIPCDRTEDSNNSRPSYMNLTESTKAKQKTSNHQYNRSQRQQSMDE 349

Query: 146 FQFLKRSAAFSNEDSKSSAGSDHPSINLSKPLCLPTRLDKNS 187
           FQFLKR+A FSN        SD PS N S+PL LPT +DK+S
Sbjct: 350 FQFLKRTAVFSN-------ASD-PSTNFSRPLYLPTYMDKSS 383


>Glyma14g11050.1 
          Length = 417

 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 92/160 (57%), Gaps = 12/160 (7%)

Query: 30  CADSLASKNSKSSEQSFVKVRKNNVSTRISAKPP-IGQVTRXXXXXXXXXXXXXXXXXXX 88
           C DS    NSK+SE   VK+RKNNVSTRISA+PP I Q                      
Sbjct: 267 CVDS---SNSKTSEPCNVKIRKNNVSTRISARPPLIWQANHLSSSPSSEFHYDESSNSSS 323

Query: 89  XXXXXXXXXGNTGLASDRTEESGNSKPNYMNLTESTKAKRKTTNHLSHRIQR-QSMDEFQ 147
                    G+  L  DRTE++ N++P+YMNLTESTKAK+KT NH  +R  R QSMDEFQ
Sbjct: 324 ICTSTTPISGSAALPCDRTEDTNNTRPSYMNLTESTKAKQKTNNHQYNRSHRQQSMDEFQ 383

Query: 148 FLKRSAAFSNEDSKSSAGSDHPSINLSKPLCLPTRLDKNS 187
           FLKR+A FSN       G+  PS N  +PL LPT +DK S
Sbjct: 384 FLKRTAVFSN-------GASDPSTNFCRPLYLPTYMDKRS 416


>Glyma04g05520.1 
          Length = 450

 Score =  124 bits (312), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 104/167 (62%), Gaps = 17/167 (10%)

Query: 28  KSCADSLASKNSKSSEQSFVKVRKNNVSTRISAKPP-IGQVTRXXXXXXXXXXXXXXXXX 86
           K   +S  S NSK      VKV+KNNV+TR+ A+PP +GQ TR                 
Sbjct: 292 KKFVESFVSSNSKPCT---VKVKKNNVTTRVFARPPLVGQATRSSSSPSSEFRYDESSAS 348

Query: 87  XXXXXXXXXXXGNTGLASDRTEES-GNS--KPNYMNLTESTKAKRKTT-NHLSHRIQRQ- 141
                      GNT    DRTE+S GN+  +PNYMNLT+STKAK+KT+ NH+ +R QRQ 
Sbjct: 349 SSICTSTTPMSGNT---CDRTEDSNGNAVARPNYMNLTQSTKAKQKTSSNHVYNRAQRQQ 405

Query: 142 SMDEFQFLKRSAAFSNEDSKSSAGSDHPSINLSKPLCLPTRLDKNSM 188
           SMDEFQFLKR+A FSN DSKS+AGSD PSIN S+PL     LDK+S+
Sbjct: 406 SMDEFQFLKRAAVFSNGDSKSTAGSD-PSINFSRPL----HLDKSSV 447


>Glyma06g05530.1 
          Length = 450

 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 98/168 (58%), Gaps = 24/168 (14%)

Query: 28  KSCADSLASKNSKSSEQSFVKVRKNNVSTRISAKPP-IGQVTRXXXXXXXXXXXXXXXXX 86
           K   +S  S NSK   QS VKV+KNNV+TRISA+PP +GQ TR                 
Sbjct: 297 KKFVESFVSSNSK---QSMVKVKKNNVTTRISARPPLVGQATRSSSSPSSEFRYDESSAS 353

Query: 87  XXXXXXXXXXXGNTGLASDRTEES-GN---SKPNYMNLTESTKAKRKTT-NHLSHRIQR- 140
                      GNT    DRTE+S GN   ++PNYMNLT+STKAK+KT+ NH+ +R QR 
Sbjct: 354 SSICTSTTPMSGNT---CDRTEDSNGNAVVARPNYMNLTQSTKAKQKTSGNHVYNRAQRQ 410

Query: 141 QSMDEFQFLKRSAAFSNEDSKSSAGSDHPSINLSKPLCLPTRLDKNSM 188
           QSMD FQFLKR+A FS  DS        PSIN S+PL     LDK+S+
Sbjct: 411 QSMDGFQFLKRAAVFSTADS-------DPSINFSRPL----HLDKSSV 447