Jatropha Genome Database

JcCB0064191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064191.20 + phase: 0 
         (185 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g42560.1                                                        63   2e-10
Glyma06g12200.1                                                        58   6e-09

>Glyma04g42560.1 
          Length = 171

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 93  WRFEQPTRVRPECVSPGCFPSPLLKR-KDSKRRTVQLPESETDYTSDLETLARWSLSSRK 151
           WRFE+P   R E VS GCF SP+L+R +  K+  V     E DYTS+LETL RWSLSS K
Sbjct: 79  WRFERPLLARAESVSSGCFFSPVLRRLQRRKKVKVPKRVVEEDYTSELETLGRWSLSSTK 138

Query: 152 XXXXXXXXXXXXXXXXXXXXXXXXEAEWAGFGLF 185
                                   +AEWAGFGLF
Sbjct: 139 -SLSPFSVASTASSSVASSPRPVSDAEWAGFGLF 171


>Glyma06g12200.1 
          Length = 173

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 93  WRFEQPTRVRPECVSPGCFPSPLLKRKDSKRRTVQLPESETDYTSDLETLARWSLSSRKX 152
           WRF++P   + E VS GCF SP L+R   +R+ V     E DY  +LETL RWSLSS K 
Sbjct: 84  WRFKRPLLAQAESVSSGCFFSPFLRRLQ-RRKKVPKRVFEEDYRPELETLGRWSLSSTK- 141

Query: 153 XXXXXXXXXXXXXXXXXXXXXXXEAEWAGFGLF 185
                                  +AEWAGFGLF
Sbjct: 142 -SLSPFRASTTSSSVASSPRPVSDAEWAGFGLF 173