Jatropha Genome Database

JcCB0062531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0062531.10 - phase: 0 
         (124 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g40940.1                                                        53   7e-08
Glyma19g43590.1                                                        49   9e-07

>Glyma03g40940.1 
          Length = 84

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 28/30 (93%)

Query: 29 ITYISNPTMVRATNASEFRAIVQELTGKDS 58
          ITYISNP +VRA +ASEFR++VQ+LTGKD+
Sbjct: 32 ITYISNPVLVRACDASEFRSVVQQLTGKDT 61


>Glyma19g43590.1 
          Length = 102

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/30 (70%), Positives = 27/30 (90%)

Query: 29 ITYISNPTMVRATNASEFRAIVQELTGKDS 58
          ITYIS+P +VRA +ASEFR++VQ+LTG DS
Sbjct: 11 ITYISSPVLVRAYDASEFRSVVQQLTGNDS 40