Jatropha Genome Database

JcCB0061481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061481.10 - phase: 2 /partial
         (117 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01200.1                                                       116   4e-27

>Glyma11g01200.1 
          Length = 680

 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 78/111 (70%), Gaps = 4/111 (3%)

Query: 1   FELIRQGLRDLAVSQSTLPKADPRIAKLAADGADAPLEELQEIISEVATNIHGSYVLKSS 60
           F+LI +GLR++AVS++ L K D ++A  AA   D P  EL  +ISEVA  I+GSYVLKSS
Sbjct: 553 FKLICEGLREMAVSKAMLSKGDSKMAVDAAHSLDGPHNELMAVISEVACEINGSYVLKSS 612

Query: 61  PDHPQYDVLRKVVIDLLLARGPNAKLKKSEVYEAAKLVLKRDINTTEYTKV 111
           PD P     R VVID+L   GPNAKLKK+E+ EAA+  L R++ + EYTKV
Sbjct: 613 PDDP----FRDVVIDMLCGSGPNAKLKKAEILEAARRKLGREVASNEYTKV 659