Jatropha Genome Database

JcCB0061321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061321.10 + phase: 0 /pseudo/partial
         (100 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g38170.1                                                        61   2e-10
Glyma06g13870.1                                                        61   2e-10
Glyma04g40980.1                                                        61   2e-10
Glyma03g35540.1                                                        61   2e-10
Glyma06g13870.2                                                        57   4e-09

>Glyma19g38170.1 
          Length = 128

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 39  NLCLVLSLREGIVNHLSWLWLA-NIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS*WRSK 96
            L LVL LR GI+   S + LA    +DKMICRKC +R+HP AVNC KKKCGHS+  R K
Sbjct: 66  TLHLVLRLRGGIIEP-SLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPK 124

Query: 97  RK 98
           +K
Sbjct: 125 KK 126


>Glyma06g13870.1 
          Length = 128

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 39  NLCLVLSLREGIVNHLSWLWLA-NIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS*WRSK 96
            L LVL LR GI+   S + LA    +DKMICRKC +R+HP AVNC KKKCGHS+  R K
Sbjct: 66  TLHLVLRLRGGIIEP-SLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPK 124

Query: 97  RK 98
           +K
Sbjct: 125 KK 126


>Glyma04g40980.1 
          Length = 128

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 39  NLCLVLSLREGIVNHLSWLWLA-NIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS*WRSK 96
            L LVL LR GI+   S + LA    +DKMICRKC +R+HP AVNC KKKCGHS+  R K
Sbjct: 66  TLHLVLRLRGGIIEP-SLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPK 124

Query: 97  RK 98
           +K
Sbjct: 125 KK 126


>Glyma03g35540.1 
          Length = 128

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 39  NLCLVLSLREGIVNHLSWLWLA-NIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS*WRSK 96
            L LVL LR GI+   S + LA    +DKMICRKC +R+HP AVNC KKKCGHS+  R K
Sbjct: 66  TLHLVLRLRGGIIEP-SLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPK 124

Query: 97  RK 98
           +K
Sbjct: 125 KK 126


>Glyma06g13870.2 
          Length = 121

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 39/54 (72%), Gaps = 3/54 (5%)

Query: 40  LCLVLSLREGIVNHLSWLWLA-NIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS 91
           L LVL LR GI+   S + LA    +DKMICRKC +R+HP AVNC KKKCGHS+
Sbjct: 67  LHLVLRLRGGIIEP-SLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 119