Jatropha Genome Database

JcCB0058191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058191.10 + phase: 0 /partial
         (126 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g33590.2                                                       184   3e-47
Glyma10g33590.1                                                       184   3e-47
Glyma20g34000.2                                                        93   8e-20
Glyma20g34000.1                                                        93   8e-20

>Glyma10g33590.2 
          Length = 385

 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 100/123 (81%), Gaps = 3/123 (2%)

Query: 4   NGAAVTSVTEISEKQHKVVKEEGATEVEVSQHRVFLLGENRWEEPSRLIGRDKHVHVSKT 63
           NGAAV SV E SE Q K VK +   E EVS   VFLLGENRWEEPSRL+ RD  V  SK 
Sbjct: 266 NGAAVASVAENSEVQQKDVKND--KETEVSHRGVFLLGENRWEEPSRLVARD-GVDKSKN 322

Query: 64  KETTSKCLSCRGEGRLLCTECDGTGEPNIEPQFLEWVDEGTKCPYCEGLGYTICDVCEGK 123
           K+ T+KCL CRGEGRL+CTECDG+GEPNIEPQF+EWV+EGTKCPYC+GLGYT+CD+C GK
Sbjct: 323 KDMTTKCLQCRGEGRLMCTECDGSGEPNIEPQFIEWVEEGTKCPYCKGLGYTVCDLCGGK 382

Query: 124 TMI 126
           TM+
Sbjct: 383 TMV 385


>Glyma10g33590.1 
          Length = 385

 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 100/123 (81%), Gaps = 3/123 (2%)

Query: 4   NGAAVTSVTEISEKQHKVVKEEGATEVEVSQHRVFLLGENRWEEPSRLIGRDKHVHVSKT 63
           NGAAV SV E SE Q K VK +   E EVS   VFLLGENRWEEPSRL+ RD  V  SK 
Sbjct: 266 NGAAVASVAENSEVQQKDVKND--KETEVSHRGVFLLGENRWEEPSRLVARD-GVDKSKN 322

Query: 64  KETTSKCLSCRGEGRLLCTECDGTGEPNIEPQFLEWVDEGTKCPYCEGLGYTICDVCEGK 123
           K+ T+KCL CRGEGRL+CTECDG+GEPNIEPQF+EWV+EGTKCPYC+GLGYT+CD+C GK
Sbjct: 323 KDMTTKCLQCRGEGRLMCTECDGSGEPNIEPQFIEWVEEGTKCPYCKGLGYTVCDLCGGK 382

Query: 124 TMI 126
           TM+
Sbjct: 383 TMV 385


>Glyma20g34000.2 
          Length = 338

 Score = 92.8 bits (229), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 57/80 (71%), Gaps = 5/80 (6%)

Query: 4   NGAAVTSVTEISEKQHKVVKEEGATEVEVSQHR-VFLLGENRWEEPSRLIGRDKHVHVSK 62
           NGAAV SV E SE Q K VK +  TEV    HR VFLLGENRWEEPSRL  R+  V  SK
Sbjct: 249 NGAAVASVAENSEGQQKDVKSDKGTEV---SHRGVFLLGENRWEEPSRLFTRN-GVDRSK 304

Query: 63  TKETTSKCLSCRGEGRLLCT 82
            K+ T+KCL CRGEGRLLCT
Sbjct: 305 NKDVTTKCLQCRGEGRLLCT 324


>Glyma20g34000.1 
          Length = 338

 Score = 92.8 bits (229), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 57/80 (71%), Gaps = 5/80 (6%)

Query: 4   NGAAVTSVTEISEKQHKVVKEEGATEVEVSQHR-VFLLGENRWEEPSRLIGRDKHVHVSK 62
           NGAAV SV E SE Q K VK +  TEV    HR VFLLGENRWEEPSRL  R+  V  SK
Sbjct: 249 NGAAVASVAENSEGQQKDVKSDKGTEV---SHRGVFLLGENRWEEPSRLFTRN-GVDRSK 304

Query: 63  TKETTSKCLSCRGEGRLLCT 82
            K+ T+KCL CRGEGRLLCT
Sbjct: 305 NKDVTTKCLQCRGEGRLLCT 324