Jatropha Genome Database

JcCB0057761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057761.10 + phase: 2 /partial
         (62 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g16270.1                                                        97   5e-21
Glyma09g04620.1                                                        97   5e-21
Glyma20g38200.1                                                        79   9e-16

>Glyma15g16270.1 
          Length = 1123

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 53/62 (85%)

Query: 1    DLGIAPQKLESYQNGEIEKTDPMERLQAVRGHLVSLPLDFMSKEDLRPVFNESEYYASHV 60
            DLGIAP+KLESY +G I+ TDP+ERL +++GHLVS PL+FM +E LRP FNESEYYA+ V
Sbjct: 1062 DLGIAPEKLESYHDGGIKNTDPLERLASLKGHLVSFPLEFMCQESLRPAFNESEYYATQV 1121

Query: 61   FY 62
            F+
Sbjct: 1122 FH 1123


>Glyma09g04620.1 
          Length = 1126

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 52/62 (83%)

Query: 1    DLGIAPQKLESYQNGEIEKTDPMERLQAVRGHLVSLPLDFMSKEDLRPVFNESEYYASHV 60
            DLGIAP+KLESY +G I  TDP+ERL +V+GHLVS PL+FM +E LRP FNESEYYA+ V
Sbjct: 1065 DLGIAPEKLESYYDGGITNTDPLERLASVKGHLVSFPLEFMCQESLRPAFNESEYYATQV 1124

Query: 61   FY 62
            F+
Sbjct: 1125 FH 1126


>Glyma20g38200.1 
          Length = 1132

 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1    DLGIAPQKLESYQNGEIEKTDPMERLQAVRGHLVSLPLDFMSKEDLRPVFNESEYYASHV 60
            D+GIAP KL  ++NGEI+  DP++RL++V+GHLVS PL+FM +EDLRP   ESE+Y +  
Sbjct: 1070 DMGIAPDKLVCHENGEIKIIDPIDRLKSVKGHLVSFPLEFMREEDLRPAVIESEFYVAPQ 1129

Query: 61   FY 62
             Y
Sbjct: 1130 VY 1131