Jatropha Genome Database

JcCB0057111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057111.10 + phase: 0 /TE/pseudo/partial
         (174 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g28010.1                                                        63   1e-10
Glyma19g27980.1                                                        47   7e-06

>Glyma19g28010.1 
          Length = 550

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 27/136 (19%)

Query: 41  CFGCGKCGHWIKECPNKITKKSHXXXXXXXXXXXXXXXCDVLLIRCPCGRGKCRIFTSHT 100
           C  CG+  HW +ECP K +                        I C CG G+C   TS +
Sbjct: 47  CITCGQKDHWYRECPFKSSNNDSQNANS---------------IWCRCGHGRCEKRTSKS 91

Query: 101 QANPERKFYTCPVDKSSG-SCGFFKWCDELSITP----------PICPCGAGFCSLNRDS 149
           + NP R +Y CP+ +    + GF KWCD+  +            P C C AG C   + +
Sbjct: 92  EKNPGRMYYVCPIKRGEKCTNGFVKWCDDPDVESDWSQPPPFKYPECKCPAGVCKREK-A 150

Query: 150 TSPYEEKWYFACRIKK 165
           T     K+YF C +K+
Sbjct: 151 THNGVVKYYFTCPVKE 166


>Glyma19g27980.1 
          Length = 608

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 25/141 (17%)

Query: 35  RNPADRCFGCGKCGHWIKECPNKITKKSHXXXXXXXXXXXXXXXCDVLLIRCPCGRGKCR 94
           R     C  C + GHW   CP+K  K                       I+CPCG G C 
Sbjct: 33  RMQQSTCHNCDQRGHWSYYCPSKSPKTKPFSPGKDSTVPSNKK------IQCPCGHGSCV 86

Query: 95  IFTSHTQANPERKFYTCPVDKSSG-SCGFFKWCDELSIT-----PPI----CPCGAGFCS 144
           I + +      R +Y CP+ +    +    KWC+E  +      PP     C C AG C 
Sbjct: 87  IKSRYG-----RDYYACPIKRGEKCTKEVVKWCNEAIVERDFQPPPFKYPHCACSAGVCK 141

Query: 145 LNRDSTSPYEEKWYFACRIKK 165
             + + S    K+YF C IK+
Sbjct: 142 RVKGTYS----KYYFICPIKQ 158