Jatropha Genome Database

JcCB0055231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0055231.10 + phase: 1 /partial
         (247 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g14220.1                                                        54   2e-07

>Glyma02g14220.1 
          Length = 421

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 23/118 (19%)

Query: 12  SLSASSTYFCVNFMGFDPSNKQYKVLNSWRHYRKPSTEYRVFTLG-TKEWRPLQSGPPF- 69
           S+ A+S +F     G+DP   Q+KVL   ++  + + + +VFTLG    WR + +  PF 
Sbjct: 174 SVKANSEFFASTHFGYDPVRDQFKVLRFLKY--QATLQVKVFTLGRDTSWRLVTAETPFA 231

Query: 70  ----------YAQRESICIDGVIFFRSWVSLRTDEGVAVLIAFDVQKETFRVIHLPRG 117
                     +    S+C++G I++R          +  L+ FDV  E FR I +P G
Sbjct: 232 MLHLENLLSSHGNSSSLCVNGAIYWRH---------LDGLLMFDVAAEQFREILVPSG 280