Jatropha Genome Database

JcCB0055221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0055221.20 + phase: 0 /pseudo
         (290 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g05140.2                                                       144   1e-34
Glyma16g05140.1                                                       144   1e-34
Glyma11g37950.1                                                        84   2e-16

>Glyma16g05140.2 
          Length = 281

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 81/100 (81%), Gaps = 1/100 (1%)

Query: 190 FSQRKAELVVPEDGKPSWTKRLLLDRNLLCSKIREEADELCRTIEENEHSARTASEMGDV 249
            SQRK EL+  E+ KPSWTKRLLL+  LLCSKIREEA+ELC+T+E NE   RTASEM DV
Sbjct: 178 ISQRKTELI-GENEKPSWTKRLLLNDKLLCSKIREEANELCQTLENNEDEKRTASEMADV 236

Query: 250 LYHTMVLLALKDVKIEDVLDVLRRRFSQSGIEEKKSRGQQ 289
           LYH MVLLA K VKIEDVL VLR RFSQSGIEEKKSR  Q
Sbjct: 237 LYHAMVLLAKKGVKIEDVLQVLRLRFSQSGIEEKKSRVSQ 276



 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 11/125 (8%)

Query: 1   MAASSLHCIQSLRFSSRSCAFFPHIGFRGDDDNKRKNSRLILASVKKSDKDLSVESKVET 60
           MA S +H +Q  R   +    +P+  ++      R++ RL+ AS+       + E KV++
Sbjct: 1   MAVSYVHMLQCNRGFHKGNLSYPNCSYKA-----RRSHRLVFASMH------TPEPKVDS 49

Query: 61  LLDSVKWDDKGLAVAIAQNIDTGAILMQGFVNRDALATTISSRKATXLQSVTVNIVDKGR 120
           LLDSVKWD KGL VAIAQN+DTGAILMQGF NR+A+ATTISSRKAT        +  KG 
Sbjct: 50  LLDSVKWDTKGLVVAIAQNVDTGAILMQGFANREAIATTISSRKATFYSRSRSTLWTKGE 109

Query: 121 NLQQF 125
               F
Sbjct: 110 TSNNF 114


>Glyma16g05140.1 
          Length = 281

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 81/100 (81%), Gaps = 1/100 (1%)

Query: 190 FSQRKAELVVPEDGKPSWTKRLLLDRNLLCSKIREEADELCRTIEENEHSARTASEMGDV 249
            SQRK EL+  E+ KPSWTKRLLL+  LLCSKIREEA+ELC+T+E NE   RTASEM DV
Sbjct: 178 ISQRKTELI-GENEKPSWTKRLLLNDKLLCSKIREEANELCQTLENNEDEKRTASEMADV 236

Query: 250 LYHTMVLLALKDVKIEDVLDVLRRRFSQSGIEEKKSRGQQ 289
           LYH MVLLA K VKIEDVL VLR RFSQSGIEEKKSR  Q
Sbjct: 237 LYHAMVLLAKKGVKIEDVLQVLRLRFSQSGIEEKKSRVSQ 276



 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 11/125 (8%)

Query: 1   MAASSLHCIQSLRFSSRSCAFFPHIGFRGDDDNKRKNSRLILASVKKSDKDLSVESKVET 60
           MA S +H +Q  R   +    +P+  ++      R++ RL+ AS+       + E KV++
Sbjct: 1   MAVSYVHMLQCNRGFHKGNLSYPNCSYKA-----RRSHRLVFASMH------TPEPKVDS 49

Query: 61  LLDSVKWDDKGLAVAIAQNIDTGAILMQGFVNRDALATTISSRKATXLQSVTVNIVDKGR 120
           LLDSVKWD KGL VAIAQN+DTGAILMQGF NR+A+ATTISSRKAT        +  KG 
Sbjct: 50  LLDSVKWDTKGLVVAIAQNVDTGAILMQGFANREAIATTISSRKATFYSRSRSTLWTKGE 109

Query: 121 NLQQF 125
               F
Sbjct: 110 TSNNF 114


>Glyma11g37950.1 
          Length = 124

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 48/65 (73%)

Query: 222 IREEADELCRTIEENEHSARTASEMGDVLYHTMVLLALKDVKIEDVLDVLRRRFSQSGIE 281
           ++     +   +E NE  +RTASEM DVLYH+M LLA K VKIEDVL VLR RFSQSGIE
Sbjct: 53  LQRRGKRVVSNLENNEGESRTASEMADVLYHSMALLAKKGVKIEDVLQVLRLRFSQSGIE 112

Query: 282 EKKSR 286
           EKKSR
Sbjct: 113 EKKSR 117