Jatropha Genome Database

JcCB0052881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052881.10 + phase: 0 /pseudo/partial
         (283 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g11750.1                                                       317   7e-87

>Glyma13g11750.1 
          Length = 1056

 Score =  317 bits (813), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 154/256 (60%), Positives = 197/256 (76%), Gaps = 1/256 (0%)

Query: 15   ATKQLDMDKAIKKALQDAGIQEREVTPFLRVRVVGLTSYHGKAVAKEGLITIWSPTEKQR 74
            A +Q +MDK+I+KAL+DAG+  R+VTPF+R+RVVGLT    +   KEG++ IW+PTE QR
Sbjct: 783  AIRQSEMDKSIEKALKDAGLGSRQVTPFMRLRVVGLTYKTRQDKPKEGIVAIWNPTETQR 842

Query: 75   NELVEGQAYAIAGLLPVNADSNTLYLQARGSTTKWEPLSPLAIKNFQPFFNPRVSVLMSN 134
             ELVEG AYAI+GL+P ++DS+ L+L  RGS+TKW PLS  + K F+PFF  R S+ +++
Sbjct: 843  QELVEGGAYAISGLMPSSSDSDILHLDTRGSSTKWLPLSYNSRKQFKPFFCNRKSIPLTS 902

Query: 135  LGEVPLSSEFDIAAYVVYVGEVYTTAQWKKQWVFVTDCSI-SALWSEELSNSLLAISFCS 193
            LG++PLS+EFDI AYVV+VG VY + Q KKQWVFVTD SI + L SE+L +SLLAI FCS
Sbjct: 903  LGDIPLSNEFDITAYVVHVGGVYISNQQKKQWVFVTDGSIMNGLQSEKLIDSLLAICFCS 962

Query: 194  PYIDDDSFTPINYNLEGSAVGFFNLIKKAKDQINHLWIAEATENSTYSFSFDSPICSHLK 253
            P ID DSF PINYNL GS VGF NLIKK KD  NH+W+A+A ENS Y  +FDS  CSHL+
Sbjct: 963  PLIDHDSFPPINYNLAGSTVGFCNLIKKEKDHTNHIWVADANENSAYYLNFDSTNCSHLR 1022

Query: 254  IAAASAQSWGKTSSLV 269
             AA+S ++W   SSL+
Sbjct: 1023 NAASSVRAWANHSSLI 1038