Jatropha Genome Database

JcCB0052451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052451.10 + phase: 1 /partial/short
         (46 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g15090.1                                                        98   2e-21
Glyma05g31820.1                                                        97   4e-21

>Glyma08g15090.1 
          Length = 165

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/46 (97%), Positives = 46/46 (100%)

Query: 1   CDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 46
           CDPKSLLF+FGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 120 CDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 165


>Glyma05g31820.1 
          Length = 169

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/46 (95%), Positives = 46/46 (100%)

Query: 1   CDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 46
           CDPKSLLF+FGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAE+
Sbjct: 124 CDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEI 169