Jatropha Genome Database

JcCB0050421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050421.10 - phase: 0 /partial
         (124 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g16980.1                                                       213   3e-56

>Glyma08g16980.1 
          Length = 433

 Score =  213 bits (543), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 113/124 (91%)

Query: 1   MAWINIRKLLLFSAIFRLILIIYGEWQDSHMEVRYTDVDYLVFSDAASLMASGESPYKRS 60
           MA ++I  LLLFSAIFR+ILI+YGEWQD+HMEVRYTDVDYLVFSDAA+LMA G+SPYKR+
Sbjct: 1   MASLDIHSLLLFSAIFRVILIVYGEWQDAHMEVRYTDVDYLVFSDAAALMAVGDSPYKRT 60

Query: 61  TYRYSPLLAFLLIPNSLIHRSWGKFLFSASDLLVGLFIHSILKRRKVPEDLCLYSVMVWL 120
           TYRYSPLLAFLLIPNS IHRSWGKFLFSASDLLVG FI+ ILK RKVPE+LC YSVM WL
Sbjct: 61  TYRYSPLLAFLLIPNSFIHRSWGKFLFSASDLLVGYFIYYILKLRKVPENLCNYSVMTWL 120

Query: 121 LNPF 124
            NPF
Sbjct: 121 FNPF 124