Jatropha Genome Database

JcCB0049771.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0049771.20 - phase: 0 /partial
         (140 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g30090.1                                                       258   2e-69

>Glyma07g30090.1 
          Length = 408

 Score =  258 bits (658), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 117/138 (84%), Positives = 129/138 (93%)

Query: 2   FHPSATVGELSEPMWPVEARNAAIANSYFVGSINRVGTEIFPNPFTSGDGKPQHSDFGHF 61
           F+PSATVGELSEPMWP+EARNAAIANSYFV SINRVGTE FPN FTSGDGKP H+DFGHF
Sbjct: 270 FNPSATVGELSEPMWPIEARNAAIANSYFVASINRVGTETFPNQFTSGDGKPAHADFGHF 329

Query: 62  YGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYELYADMLASYL 121
           YGSS+ SAPDASCTPSLSR +DGLL++DMDLNLCRQ+KDKWGFRMT+RYELYAD LA Y+
Sbjct: 330 YGSSYVSAPDASCTPSLSRNRDGLLVTDMDLNLCRQVKDKWGFRMTSRYELYADTLARYV 389

Query: 122 KPDFEPQIISDPLLHKKS 139
           KPDFEPQ+ SDPLLH+KS
Sbjct: 390 KPDFEPQVTSDPLLHRKS 407