Jatropha Genome Database

JcCB0049611.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0049611.20 - phase: 0 /partial/short
         (45 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g03250.1                                                        61   2e-10
Glyma13g05750.1                                                        61   3e-10
Glyma13g05750.2                                                        60   5e-10

>Glyma19g03250.1 
          Length = 418

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 32/43 (74%)

Query: 1   MADDLVTFDGGYQMTLLPGGMYMGYPSDIAKNKAEPLSLMLSL 43
           ++D LVTFDGGYQM LLPGGMYMG P D+AK+ AE  S  L  
Sbjct: 343 VSDHLVTFDGGYQMILLPGGMYMGCPCDVAKSVAESKSFHLEF 385


>Glyma13g05750.1 
          Length = 392

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 32/43 (74%)

Query: 1   MADDLVTFDGGYQMTLLPGGMYMGYPSDIAKNKAEPLSLMLSL 43
           ++D LVTFDGGYQM LLPGGMYMG P D+AK+ AE  S  L  
Sbjct: 317 VSDYLVTFDGGYQMILLPGGMYMGCPCDVAKSVAESKSFHLEF 359


>Glyma13g05750.2 
          Length = 273

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 32/43 (74%)

Query: 1   MADDLVTFDGGYQMTLLPGGMYMGYPSDIAKNKAEPLSLMLSL 43
           ++D LVTFDGGYQM LLPGGMYMG P D+AK+ AE  S  L  
Sbjct: 198 VSDYLVTFDGGYQMILLPGGMYMGCPCDVAKSVAESKSFHLEF 240